Gene : Seita.5G228100 S. italica v2.2
Defline:  (1 of 1) PF15370 - Domain of unknown function (DUF4598) (DUF4598) Genomic Order:  2281
Name:  ? Seita.5G228100 Secondary Identifier:  ? PAC:32684600
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G228100 0.5kb upstream 0.5kb upstream 2038 true scaffold_5: 28943920-28945957 Setaria italica
Seita.5G228100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 28945458-28945957 Setaria italica
Seita.5G228100 0.5kb downstream 0.5kb downstream 2038 true scaffold_5: 28943420-28945457 Setaria italica
Seita.5G228100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 28943420-28943919 Setaria italica
Seita.5G228100 1.0kb upstream 1.0kb upstream 2538 true scaffold_5: 28943920-28946457 Setaria italica
Seita.5G228100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 28945458-28946457 Setaria italica
Seita.5G228100 1.0kb downstream 1.0kb downstream 2538 true scaffold_5: 28942920-28945457 Setaria italica
Seita.5G228100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 28942920-28943919 Setaria italica
Seita.5G228100 2.0kb upstream 2.0kb upstream 3538 true scaffold_5: 28943920-28947457 Setaria italica
Seita.5G228100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 28945458-28947457 Setaria italica
Seita.5G228100 2.0kb downstream 2.0kb downstream 3538 true scaffold_5: 28941920-28945457 Setaria italica
Seita.5G228100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 28941920-28943919 Setaria italica
Seita.5G228100 5.0kb upstream 5.0kb upstream 6538 true scaffold_5: 28943920-28950457 Setaria italica
Seita.5G228100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 28945458-28950457 Setaria italica
Seita.5G228100 5.0kb downstream 5.0kb downstream 6538 true scaffold_5: 28938920-28945457 Setaria italica
Seita.5G228100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 28938920-28943919 Setaria italica
Seita.5G228100 10.0kb upstream 10.0kb upstream 11538 true scaffold_5: 28943920-28955457 Setaria italica
Seita.5G228100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 28945458-28955457 Setaria italica
Seita.5G228100 10.0kb downstream 10.0kb downstream 11538 true scaffold_5: 28933920-28945457 Setaria italica
Seita.5G228100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 28933920-28943919 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179264 5267 Panicoideae View MSA
124568997 5269 Grass View MSA
122046773 5273 Angiosperm View MSA
121350324 5274 Embryophyte View MSA
123426876 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.418     High High
cufflinks 14.424     High  
cufflinks 9.869        
cufflinks 13.385     High  
cufflinks 9.109       Low
cufflinks 13.899     High  
cufflinks 12.114        
cufflinks 18.061     High High
cufflinks 12.019        
cufflinks 17.999     High High
cufflinks 15.023     High  
cufflinks 13.776     High  
cufflinks 6.876       Low
cufflinks 7.423       Low
cufflinks 11.454        
cufflinks 13.455     High  
cufflinks 18.133     High High
cufflinks 14.766     High  
cufflinks 8.772       Low
cufflinks 12.156        

0 Strain