Gene : Seita.5G229300 S. italica v2.2
Defline:  (1 of 1) PTHR23076:SF40 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 11, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  2293
Name:  ? Seita.5G229300 Secondary Identifier:  ? PAC:32683505
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G229300 0.5kb upstream 0.5kb upstream 7697 true scaffold_5: 29040422-29048118 Setaria italica
Seita.5G229300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 29047619-29048118 Setaria italica
Seita.5G229300 0.5kb downstream 0.5kb downstream 7697 true scaffold_5: 29039922-29047618 Setaria italica
Seita.5G229300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 29039922-29040421 Setaria italica
Seita.5G229300 1.0kb upstream 1.0kb upstream 8197 true scaffold_5: 29040422-29048618 Setaria italica
Seita.5G229300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 29047619-29048618 Setaria italica
Seita.5G229300 1.0kb downstream 1.0kb downstream 8197 true scaffold_5: 29039422-29047618 Setaria italica
Seita.5G229300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 29039422-29040421 Setaria italica
Seita.5G229300 2.0kb upstream 2.0kb upstream 9197 true scaffold_5: 29040422-29049618 Setaria italica
Seita.5G229300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 29047619-29049618 Setaria italica
Seita.5G229300 2.0kb downstream 2.0kb downstream 9197 true scaffold_5: 29038422-29047618 Setaria italica
Seita.5G229300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 29038422-29040421 Setaria italica
Seita.5G229300 5.0kb upstream 5.0kb upstream 12197 true scaffold_5: 29040422-29052618 Setaria italica
Seita.5G229300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 29047619-29052618 Setaria italica
Seita.5G229300 5.0kb downstream 5.0kb downstream 12197 true scaffold_5: 29035422-29047618 Setaria italica
Seita.5G229300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 29035422-29040421 Setaria italica
Seita.5G229300 10.0kb upstream 10.0kb upstream 17197 true scaffold_5: 29040422-29057618 Setaria italica
Seita.5G229300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 29047619-29057618 Setaria italica
Seita.5G229300 10.0kb downstream 10.0kb downstream 17197 true scaffold_5: 29030422-29047618 Setaria italica
Seita.5G229300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 29030422-29040421 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181541 5267 Panicoideae View MSA
124571042 5269 Grass View MSA
122043793 5273 Angiosperm View MSA
121346284 5274 Embryophyte View MSA
123428638 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.063        
cufflinks 7.551        
cufflinks 6.091        
cufflinks 7.109        
cufflinks 12.686     High High
cufflinks 8.038        
cufflinks 14.96     High High
cufflinks 9.977        
cufflinks 16.075     High High
cufflinks 4.91       Low
cufflinks 6.886        
cufflinks 5.259        
cufflinks 4.576       Low
cufflinks 7.43        
cufflinks 5.471        
cufflinks 20.357     High High
cufflinks 5.15        
cufflinks 9.518        
cufflinks 7.109        
cufflinks 4.918       Low

0 Strain