Gene : Seita.5G230400 S. italica v2.2
Genomic Order:  2304 Name:  ? Seita.5G230400
Secondary Identifier:  ? PAC:32683674
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G230400 0.5kb upstream 0.5kb upstream 1134 true scaffold_5: 29136524-29137657 Setaria italica
Seita.5G230400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 29136524-29137023 Setaria italica
Seita.5G230400 0.5kb downstream 0.5kb downstream 1134 true scaffold_5: 29137024-29138157 Setaria italica
Seita.5G230400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 29137658-29138157 Setaria italica
Seita.5G230400 1.0kb upstream 1.0kb upstream 1634 true scaffold_5: 29136024-29137657 Setaria italica
Seita.5G230400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 29136024-29137023 Setaria italica
Seita.5G230400 1.0kb downstream 1.0kb downstream 1634 true scaffold_5: 29137024-29138657 Setaria italica
Seita.5G230400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 29137658-29138657 Setaria italica
Seita.5G230400 2.0kb upstream 2.0kb upstream 2634 true scaffold_5: 29135024-29137657 Setaria italica
Seita.5G230400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 29135024-29137023 Setaria italica
Seita.5G230400 2.0kb downstream 2.0kb downstream 2634 true scaffold_5: 29137024-29139657 Setaria italica
Seita.5G230400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 29137658-29139657 Setaria italica
Seita.5G230400 5.0kb upstream 5.0kb upstream 5634 true scaffold_5: 29132024-29137657 Setaria italica
Seita.5G230400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 29132024-29137023 Setaria italica
Seita.5G230400 5.0kb downstream 5.0kb downstream 5634 true scaffold_5: 29137024-29142657 Setaria italica
Seita.5G230400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 29137658-29142657 Setaria italica
Seita.5G230400 10.0kb upstream 10.0kb upstream 10634 true scaffold_5: 29127024-29137657 Setaria italica
Seita.5G230400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 29127024-29137023 Setaria italica
Seita.5G230400 10.0kb downstream 10.0kb downstream 10634 true scaffold_5: 29137024-29147657 Setaria italica
Seita.5G230400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 29137658-29147657 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029230 5273 Angiosperm View MSA
122183922 5267 Panicoideae View MSA
124581303 5269 Grass View MSA
121298592 5274 Embryophyte View MSA
123336555 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.368        
cufflinks 2.058       High
cufflinks 0.277       Low
cufflinks 0.523        
cufflinks 0.664        
cufflinks 2.561       High
cufflinks 0.36        
cufflinks 0.355        
cufflinks 0.344        
cufflinks 2.483       High
cufflinks 0.71        
cufflinks 0.927        
cufflinks 2.754       High
cufflinks 0.277       Low
cufflinks 1.161        
cufflinks 0.371        
cufflinks 1.105        
cufflinks 0.339        
cufflinks 0.332        
cufflinks 1.404        

0 Strain