Gene : Seita.5G236100 S. italica v2.2
Defline:  (1 of 1) 2.1.1.107 - Uroporphyrinogen-III C-methyltransferase / Uroporphyrinogen-III methyltransferase Genomic Order:  2361
Name:  ? Seita.5G236100 Secondary Identifier:  ? PAC:32681859
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5194 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G236100 0.5kb upstream 0.5kb upstream 3944 true scaffold_5: 29983904-29987847 Setaria italica
Seita.5G236100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 29983904-29984403 Setaria italica
Seita.5G236100 0.5kb downstream 0.5kb downstream 3944 true scaffold_5: 29984404-29988347 Setaria italica
Seita.5G236100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 29987848-29988347 Setaria italica
Seita.5G236100 1.0kb upstream 1.0kb upstream 4444 true scaffold_5: 29983404-29987847 Setaria italica
Seita.5G236100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 29983404-29984403 Setaria italica
Seita.5G236100 1.0kb downstream 1.0kb downstream 4444 true scaffold_5: 29984404-29988847 Setaria italica
Seita.5G236100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 29987848-29988847 Setaria italica
Seita.5G236100 2.0kb upstream 2.0kb upstream 5444 true scaffold_5: 29982404-29987847 Setaria italica
Seita.5G236100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 29982404-29984403 Setaria italica
Seita.5G236100 2.0kb downstream 2.0kb downstream 5444 true scaffold_5: 29984404-29989847 Setaria italica
Seita.5G236100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 29987848-29989847 Setaria italica
Seita.5G236100 5.0kb upstream 5.0kb upstream 8444 true scaffold_5: 29979404-29987847 Setaria italica
Seita.5G236100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 29979404-29984403 Setaria italica
Seita.5G236100 5.0kb downstream 5.0kb downstream 8444 true scaffold_5: 29984404-29992847 Setaria italica
Seita.5G236100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 29987848-29992847 Setaria italica
Seita.5G236100 10.0kb upstream 10.0kb upstream 13444 true scaffold_5: 29974404-29987847 Setaria italica
Seita.5G236100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 29974404-29984403 Setaria italica
Seita.5G236100 10.0kb downstream 10.0kb downstream 13444 true scaffold_5: 29984404-29997847 Setaria italica
Seita.5G236100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 29987848-29997847 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182417 5267 Panicoideae View MSA
124577758 5269 Grass View MSA
122045431 5273 Angiosperm View MSA
121347676 5274 Embryophyte View MSA
123426668 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.978       Low
cufflinks 4.206       Low
cufflinks 12.187     High  
cufflinks 12.47     High  
cufflinks 27.199     High  
cufflinks 3.242       Low
cufflinks 53.356     High High
cufflinks 19.108     High  
cufflinks 13.799     High  
cufflinks 8.163        
cufflinks 4.613       Low
cufflinks 9.75        
cufflinks 19.104     High  
cufflinks 46.722     High High
cufflinks 23.316     High  
cufflinks 17.195     High  
cufflinks 99.298     High High
cufflinks 9.685        
cufflinks 129.956     High High
cufflinks 29.31     High  

0 Strain