Gene : Seita.5G240300 S. italica v2.2
Defline:  (1 of 1) PTHR11062//PTHR11062:SF75 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED Genomic Order:  2403
Name:  ? Seita.5G240300 Secondary Identifier:  ? PAC:32684312
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5980 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G240300 0.5kb upstream 0.5kb upstream 2494 true scaffold_5: 30355125-30357618 Setaria italica
Seita.5G240300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 30355125-30355624 Setaria italica
Seita.5G240300 0.5kb downstream 0.5kb downstream 2494 true scaffold_5: 30355625-30358118 Setaria italica
Seita.5G240300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 30357619-30358118 Setaria italica
Seita.5G240300 1.0kb upstream 1.0kb upstream 2994 true scaffold_5: 30354625-30357618 Setaria italica
Seita.5G240300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 30354625-30355624 Setaria italica
Seita.5G240300 1.0kb downstream 1.0kb downstream 2994 true scaffold_5: 30355625-30358618 Setaria italica
Seita.5G240300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 30357619-30358618 Setaria italica
Seita.5G240300 2.0kb upstream 2.0kb upstream 3994 true scaffold_5: 30353625-30357618 Setaria italica
Seita.5G240300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 30353625-30355624 Setaria italica
Seita.5G240300 2.0kb downstream 2.0kb downstream 3994 true scaffold_5: 30355625-30359618 Setaria italica
Seita.5G240300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 30357619-30359618 Setaria italica
Seita.5G240300 5.0kb upstream 5.0kb upstream 6994 true scaffold_5: 30350625-30357618 Setaria italica
Seita.5G240300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 30350625-30355624 Setaria italica
Seita.5G240300 5.0kb downstream 5.0kb downstream 6994 true scaffold_5: 30355625-30362618 Setaria italica
Seita.5G240300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 30357619-30362618 Setaria italica
Seita.5G240300 10.0kb upstream 10.0kb upstream 11994 true scaffold_5: 30345625-30357618 Setaria italica
Seita.5G240300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 30345625-30355624 Setaria italica
Seita.5G240300 10.0kb downstream 10.0kb downstream 11994 true scaffold_5: 30355625-30367618 Setaria italica
Seita.5G240300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 30357619-30367618 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198769 5267 Panicoideae View MSA
124573490 5269 Grass View MSA
122046187 5273 Angiosperm View MSA
121349832 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.026     Low  
cufflinks 0.047     Low  
cufflinks 0.013     Low Low
cufflinks 0.012     Low Low
cufflinks 0.009     Low Low
cufflinks 0.055     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.055     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.133       High
cufflinks 0.102     Low High
cufflinks 0.046     Low  
cufflinks 0.047     Low  
cufflinks 0.01     Low Low
cufflinks 0.053     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.028     Low  
cufflinks 0.137       High

0 Strain