Gene : Seita.5G320500 S. italica v2.2
Defline:  (1 of 1) PTHR30372 - LIPID-A-DISACCHARIDE SYNTHASE Genomic Order:  3205
Name:  ? Seita.5G320500 Secondary Identifier:  ? PAC:32683698
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica NAGLIPASYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G320500 0.5kb upstream 0.5kb upstream 7336 true scaffold_5: 36995972-37003307 Setaria italica
Seita.5G320500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37002808-37003307 Setaria italica
Seita.5G320500 0.5kb downstream 0.5kb downstream 7336 true scaffold_5: 36995472-37002807 Setaria italica
Seita.5G320500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36995472-36995971 Setaria italica
Seita.5G320500 1.0kb upstream 1.0kb upstream 7836 true scaffold_5: 36995972-37003807 Setaria italica
Seita.5G320500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37002808-37003807 Setaria italica
Seita.5G320500 1.0kb downstream 1.0kb downstream 7836 true scaffold_5: 36994972-37002807 Setaria italica
Seita.5G320500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36994972-36995971 Setaria italica
Seita.5G320500 2.0kb upstream 2.0kb upstream 8836 true scaffold_5: 36995972-37004807 Setaria italica
Seita.5G320500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37002808-37004807 Setaria italica
Seita.5G320500 2.0kb downstream 2.0kb downstream 8836 true scaffold_5: 36993972-37002807 Setaria italica
Seita.5G320500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36993972-36995971 Setaria italica
Seita.5G320500 5.0kb upstream 5.0kb upstream 11836 true scaffold_5: 36995972-37007807 Setaria italica
Seita.5G320500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 37002808-37007807 Setaria italica
Seita.5G320500 5.0kb downstream 5.0kb downstream 11836 true scaffold_5: 36990972-37002807 Setaria italica
Seita.5G320500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36990972-36995971 Setaria italica
Seita.5G320500 10.0kb upstream 10.0kb upstream 16836 true scaffold_5: 36995972-37012807 Setaria italica
Seita.5G320500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 37002808-37012807 Setaria italica
Seita.5G320500 10.0kb downstream 10.0kb downstream 16836 true scaffold_5: 36985972-37002807 Setaria italica
Seita.5G320500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36985972-36995971 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180013 5267 Panicoideae View MSA
124573921 5269 Grass View MSA
122042549 5273 Angiosperm View MSA
121345953 5274 Embryophyte View MSA
123380297 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.919        
cufflinks 0.791        
cufflinks 1.004        
cufflinks 0.738        
cufflinks 0.476       Low
cufflinks 1.099        
cufflinks 0.664        
cufflinks 0.518       Low
cufflinks 0.613       Low
cufflinks 0.767        
cufflinks 0.824        
cufflinks 1.486       High
cufflinks 1.125        
cufflinks 1.303       High
cufflinks 1.062        
cufflinks 0.826        
cufflinks 1.557       High
cufflinks 0.812        
cufflinks 0.654        
cufflinks 1.269       High

0 Strain