Gene : Seita.5G318000 S. italica v2.2
Defline:  (1 of 3) PF06884 - Protein of unknown function (DUF1264) (DUF1264) Genomic Order:  3180
Name:  ? Seita.5G318000 Secondary Identifier:  ? PAC:32682991
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G318000 0.5kb upstream 0.5kb upstream 1341 true scaffold_5: 36845397-36846737 Setaria italica
Seita.5G318000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36846238-36846737 Setaria italica
Seita.5G318000 0.5kb downstream 0.5kb downstream 1341 true scaffold_5: 36844897-36846237 Setaria italica
Seita.5G318000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36844897-36845396 Setaria italica
Seita.5G318000 1.0kb upstream 1.0kb upstream 1841 true scaffold_5: 36845397-36847237 Setaria italica
Seita.5G318000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36846238-36847237 Setaria italica
Seita.5G318000 1.0kb downstream 1.0kb downstream 1841 true scaffold_5: 36844397-36846237 Setaria italica
Seita.5G318000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36844397-36845396 Setaria italica
Seita.5G318000 2.0kb upstream 2.0kb upstream 2841 true scaffold_5: 36845397-36848237 Setaria italica
Seita.5G318000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36846238-36848237 Setaria italica
Seita.5G318000 2.0kb downstream 2.0kb downstream 2841 true scaffold_5: 36843397-36846237 Setaria italica
Seita.5G318000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36843397-36845396 Setaria italica
Seita.5G318000 5.0kb upstream 5.0kb upstream 5841 true scaffold_5: 36845397-36851237 Setaria italica
Seita.5G318000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36846238-36851237 Setaria italica
Seita.5G318000 5.0kb downstream 5.0kb downstream 5841 true scaffold_5: 36840397-36846237 Setaria italica
Seita.5G318000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36840397-36845396 Setaria italica
Seita.5G318000 10.0kb upstream 10.0kb upstream 10841 true scaffold_5: 36845397-36856237 Setaria italica
Seita.5G318000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36846238-36856237 Setaria italica
Seita.5G318000 10.0kb downstream 10.0kb downstream 10841 true scaffold_5: 36835397-36846237 Setaria italica
Seita.5G318000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36835397-36845396 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175325 5267 Panicoideae View MSA
124583471 5269 Grass View MSA
122044029 5273 Angiosperm View MSA
121350968 5274 Embryophyte View MSA
123426811 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low Low
cufflinks 0.021     Low  
cufflinks 0.039     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.166       High
cufflinks 0.051     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.061     Low  

0 Strain