Gene : Seita.5G323000 S. italica v2.2
Defline:  (1 of 1) PTHR22792:SF58 - LA-RELATED PROTEIN 6A Genomic Order:  3230
Name:  ? Seita.5G323000 Secondary Identifier:  ? PAC:32682176
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G323000 0.5kb upstream 0.5kb upstream 5393 true scaffold_5: 37243598-37248990 Setaria italica
Seita.5G323000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37248491-37248990 Setaria italica
Seita.5G323000 0.5kb downstream 0.5kb downstream 5393 true scaffold_5: 37243098-37248490 Setaria italica
Seita.5G323000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 37243098-37243597 Setaria italica
Seita.5G323000 1.0kb upstream 1.0kb upstream 5893 true scaffold_5: 37243598-37249490 Setaria italica
Seita.5G323000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37248491-37249490 Setaria italica
Seita.5G323000 1.0kb downstream 1.0kb downstream 5893 true scaffold_5: 37242598-37248490 Setaria italica
Seita.5G323000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37242598-37243597 Setaria italica
Seita.5G323000 2.0kb upstream 2.0kb upstream 6893 true scaffold_5: 37243598-37250490 Setaria italica
Seita.5G323000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37248491-37250490 Setaria italica
Seita.5G323000 2.0kb downstream 2.0kb downstream 6893 true scaffold_5: 37241598-37248490 Setaria italica
Seita.5G323000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 37241598-37243597 Setaria italica
Seita.5G323000 5.0kb upstream 5.0kb upstream 9893 true scaffold_5: 37243598-37253490 Setaria italica
Seita.5G323000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 37248491-37253490 Setaria italica
Seita.5G323000 5.0kb downstream 5.0kb downstream 9893 true scaffold_5: 37238598-37248490 Setaria italica
Seita.5G323000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 37238598-37243597 Setaria italica
Seita.5G323000 10.0kb upstream 10.0kb upstream 14893 true scaffold_5: 37243598-37258490 Setaria italica
Seita.5G323000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 37248491-37258490 Setaria italica
Seita.5G323000 10.0kb downstream 10.0kb downstream 14893 true scaffold_5: 37233598-37248490 Setaria italica
Seita.5G323000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 37233598-37243597 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183555 5267 Panicoideae View MSA
124572781 5269 Grass View MSA
122043814 5273 Angiosperm View MSA
121349510 5274 Embryophyte View MSA
123427383 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.031     High  
cufflinks 12.936        
cufflinks 6.296       Low
cufflinks 4.228       Low
cufflinks 6.777       Low
cufflinks 13.0        
cufflinks 10.706        
cufflinks 15.574     High  
cufflinks 14.33     High  
cufflinks 23.967     High High
cufflinks 16.618     High  
cufflinks 19.83     High High
cufflinks 14.519     High  
cufflinks 10.637        
cufflinks 13.929        
cufflinks 11.517        
cufflinks 21.798     High High
cufflinks 15.127     High  
cufflinks 6.094       Low
cufflinks 13.11        

0 Strain