Gene : Seita.5G323200 S. italica v2.2
Defline:  (1 of 2) PTHR10217//PTHR10217:SF520 - VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL Genomic Order:  3232
Name:  ? Seita.5G323200 Secondary Identifier:  ? PAC:32684871
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G323200 0.5kb upstream 0.5kb upstream 3319 true scaffold_5: 37290494-37293812 Setaria italica
Seita.5G323200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37290494-37290993 Setaria italica
Seita.5G323200 0.5kb downstream 0.5kb downstream 3319 true scaffold_5: 37290994-37294312 Setaria italica
Seita.5G323200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 37293813-37294312 Setaria italica
Seita.5G323200 1.0kb upstream 1.0kb upstream 3819 true scaffold_5: 37289994-37293812 Setaria italica
Seita.5G323200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37289994-37290993 Setaria italica
Seita.5G323200 1.0kb downstream 1.0kb downstream 3819 true scaffold_5: 37290994-37294812 Setaria italica
Seita.5G323200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37293813-37294812 Setaria italica
Seita.5G323200 2.0kb upstream 2.0kb upstream 4819 true scaffold_5: 37288994-37293812 Setaria italica
Seita.5G323200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37288994-37290993 Setaria italica
Seita.5G323200 2.0kb downstream 2.0kb downstream 4819 true scaffold_5: 37290994-37295812 Setaria italica
Seita.5G323200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 37293813-37295812 Setaria italica
Seita.5G323200 5.0kb upstream 5.0kb upstream 7819 true scaffold_5: 37285994-37293812 Setaria italica
Seita.5G323200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 37285994-37290993 Setaria italica
Seita.5G323200 5.0kb downstream 5.0kb downstream 7819 true scaffold_5: 37290994-37298812 Setaria italica
Seita.5G323200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 37293813-37298812 Setaria italica
Seita.5G323200 10.0kb upstream 10.0kb upstream 12819 true scaffold_5: 37280994-37293812 Setaria italica
Seita.5G323200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 37280994-37290993 Setaria italica
Seita.5G323200 10.0kb downstream 10.0kb downstream 12819 true scaffold_5: 37290994-37303812 Setaria italica
Seita.5G323200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 37293813-37303812 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179831 5267 Panicoideae View MSA
124572133 5269 Grass View MSA
122043816 5273 Angiosperm View MSA
121310193 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.91       High
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.775       High
cufflinks 0.006     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.057     Low  
cufflinks 0.048     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.057     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.045     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.072     Low  

0 Strain