Gene : Seita.5G320600 S. italica v2.2
Defline:  (1 of 1) PTHR23115:SF14 - ELONGATION FACTOR FAMILY PROTEIN Genomic Order:  3206
Name:  ? Seita.5G320600 Secondary Identifier:  ? PAC:32683943
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G320600 0.5kb upstream 0.5kb upstream 10301 true scaffold_5: 37002401-37012701 Setaria italica
Seita.5G320600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37002401-37002900 Setaria italica
Seita.5G320600 0.5kb downstream 0.5kb downstream 10301 true scaffold_5: 37002901-37013201 Setaria italica
Seita.5G320600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 37012702-37013201 Setaria italica
Seita.5G320600 1.0kb upstream 1.0kb upstream 10801 true scaffold_5: 37001901-37012701 Setaria italica
Seita.5G320600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37001901-37002900 Setaria italica
Seita.5G320600 1.0kb downstream 1.0kb downstream 10801 true scaffold_5: 37002901-37013701 Setaria italica
Seita.5G320600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37012702-37013701 Setaria italica
Seita.5G320600 2.0kb upstream 2.0kb upstream 11801 true scaffold_5: 37000901-37012701 Setaria italica
Seita.5G320600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37000901-37002900 Setaria italica
Seita.5G320600 2.0kb downstream 2.0kb downstream 11801 true scaffold_5: 37002901-37014701 Setaria italica
Seita.5G320600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 37012702-37014701 Setaria italica
Seita.5G320600 5.0kb upstream 5.0kb upstream 14801 true scaffold_5: 36997901-37012701 Setaria italica
Seita.5G320600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36997901-37002900 Setaria italica
Seita.5G320600 5.0kb downstream 5.0kb downstream 14801 true scaffold_5: 37002901-37017701 Setaria italica
Seita.5G320600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 37012702-37017701 Setaria italica
Seita.5G320600 10.0kb upstream 10.0kb upstream 19801 true scaffold_5: 36992901-37012701 Setaria italica
Seita.5G320600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36992901-37002900 Setaria italica
Seita.5G320600 10.0kb downstream 10.0kb downstream 19801 true scaffold_5: 37002901-37022701 Setaria italica
Seita.5G320600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 37012702-37022701 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178879 5267 Panicoideae View MSA
124579634 5269 Grass View MSA
122047839 5273 Angiosperm View MSA
121347547 5274 Embryophyte View MSA
123425076 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.372        
cufflinks 7.032        
cufflinks 11.447     High High
cufflinks 6.811        
cufflinks 5.931        
cufflinks 7.983        
cufflinks 3.304       Low
cufflinks 6.306        
cufflinks 8.258        
cufflinks 3.631       Low
cufflinks 5.869        
cufflinks 6.893        
cufflinks 4.965        
cufflinks 12.728       High
cufflinks 6.772        
cufflinks 4.086       Low
cufflinks 9.08       High
cufflinks 4.474        
cufflinks 4.488        
cufflinks 7.681        

0 Strain