Gene : Seita.5G320900 S. italica v2.2
Defline:  (1 of 1) PTHR11695:SF509 - RETICULON-4-INTERACTING PROTEIN 1 HOMOLOG, MITOCHONDRIAL Genomic Order:  3209
Name:  ? Seita.5G320900 Secondary Identifier:  ? PAC:32685474
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G320900 0.5kb upstream 0.5kb upstream 5337 true scaffold_5: 37032308-37037644 Setaria italica
Seita.5G320900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37032308-37032807 Setaria italica
Seita.5G320900 0.5kb downstream 0.5kb downstream 5337 true scaffold_5: 37032808-37038144 Setaria italica
Seita.5G320900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 37037645-37038144 Setaria italica
Seita.5G320900 1.0kb upstream 1.0kb upstream 5837 true scaffold_5: 37031808-37037644 Setaria italica
Seita.5G320900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37031808-37032807 Setaria italica
Seita.5G320900 1.0kb downstream 1.0kb downstream 5837 true scaffold_5: 37032808-37038644 Setaria italica
Seita.5G320900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37037645-37038644 Setaria italica
Seita.5G320900 2.0kb upstream 2.0kb upstream 6837 true scaffold_5: 37030808-37037644 Setaria italica
Seita.5G320900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37030808-37032807 Setaria italica
Seita.5G320900 2.0kb downstream 2.0kb downstream 6837 true scaffold_5: 37032808-37039644 Setaria italica
Seita.5G320900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 37037645-37039644 Setaria italica
Seita.5G320900 5.0kb upstream 5.0kb upstream 9837 true scaffold_5: 37027808-37037644 Setaria italica
Seita.5G320900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 37027808-37032807 Setaria italica
Seita.5G320900 5.0kb downstream 5.0kb downstream 9837 true scaffold_5: 37032808-37042644 Setaria italica
Seita.5G320900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 37037645-37042644 Setaria italica
Seita.5G320900 10.0kb upstream 10.0kb upstream 14837 true scaffold_5: 37022808-37037644 Setaria italica
Seita.5G320900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 37022808-37032807 Setaria italica
Seita.5G320900 10.0kb downstream 10.0kb downstream 14837 true scaffold_5: 37032808-37047644 Setaria italica
Seita.5G320900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 37037645-37047644 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122174979 5267 Panicoideae View MSA
124584343 5269 Grass View MSA
122044013 5273 Angiosperm View MSA
121347528 5274 Embryophyte View MSA
123428381 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.434        
cufflinks 4.604        
cufflinks 2.401       Low
cufflinks 3.723        
cufflinks 3.985        
cufflinks 4.116        
cufflinks 3.273        
cufflinks 4.536        
cufflinks 4.089        
cufflinks 3.919        
cufflinks 3.324        
cufflinks 2.725        
cufflinks 3.148        
cufflinks 1.618       Low
cufflinks 2.586       Low
cufflinks 6.687       High
cufflinks 4.308        
cufflinks 3.596        
cufflinks 3.328        
cufflinks 3.0        

0 Strain