Gene : Seita.5G331400 S. italica v2.2
Genomic Order:  3314 Name:  ? Seita.5G331400
Secondary Identifier:  ? PAC:32683694
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G331400 0.5kb upstream 0.5kb upstream 3498 true scaffold_5: 37863261-37866758 Setaria italica
Seita.5G331400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37863261-37863760 Setaria italica
Seita.5G331400 0.5kb downstream 0.5kb downstream 3498 true scaffold_5: 37863761-37867258 Setaria italica
Seita.5G331400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 37866759-37867258 Setaria italica
Seita.5G331400 1.0kb upstream 1.0kb upstream 3998 true scaffold_5: 37862761-37866758 Setaria italica
Seita.5G331400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37862761-37863760 Setaria italica
Seita.5G331400 1.0kb downstream 1.0kb downstream 3998 true scaffold_5: 37863761-37867758 Setaria italica
Seita.5G331400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37866759-37867758 Setaria italica
Seita.5G331400 2.0kb upstream 2.0kb upstream 4998 true scaffold_5: 37861761-37866758 Setaria italica
Seita.5G331400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37861761-37863760 Setaria italica
Seita.5G331400 2.0kb downstream 2.0kb downstream 4998 true scaffold_5: 37863761-37868758 Setaria italica
Seita.5G331400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 37866759-37868758 Setaria italica
Seita.5G331400 5.0kb upstream 5.0kb upstream 7998 true scaffold_5: 37858761-37866758 Setaria italica
Seita.5G331400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 37858761-37863760 Setaria italica
Seita.5G331400 5.0kb downstream 5.0kb downstream 7998 true scaffold_5: 37863761-37871758 Setaria italica
Seita.5G331400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 37866759-37871758 Setaria italica
Seita.5G331400 10.0kb upstream 10.0kb upstream 12998 true scaffold_5: 37853761-37866758 Setaria italica
Seita.5G331400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 37853761-37863760 Setaria italica
Seita.5G331400 10.0kb downstream 10.0kb downstream 12998 true scaffold_5: 37863761-37876758 Setaria italica
Seita.5G331400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 37866759-37876758 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180014 5267 Panicoideae View MSA
124571529 5269 Grass View MSA
122047025 5273 Angiosperm View MSA
121345668 5274 Embryophyte View MSA
123426793 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.177       Low
cufflinks 3.782       High
cufflinks 2.266        
cufflinks 2.314        
cufflinks 2.47        
cufflinks 1.983        
cufflinks 2.127        
cufflinks 1.871        
cufflinks 2.003        
cufflinks 2.777        
cufflinks 1.967        
cufflinks 1.431        
cufflinks 1.529        
cufflinks 2.333        
cufflinks 1.654        
cufflinks 1.676        
cufflinks 1.228       Low
cufflinks 3.506       High
cufflinks 3.414       High
cufflinks 1.117       Low

0 Strain