Gene : Seita.5G330900 S. italica v2.2
Defline:  (1 of 2) PF09341 - Transcription factor Pcc1 (Pcc1) Genomic Order:  3309
Name:  ? Seita.5G330900 Secondary Identifier:  ? PAC:32683700
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G330900 0.5kb upstream 0.5kb upstream 3130 true scaffold_5: 37832838-37835967 Setaria italica
Seita.5G330900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37835468-37835967 Setaria italica
Seita.5G330900 0.5kb downstream 0.5kb downstream 3130 true scaffold_5: 37832338-37835467 Setaria italica
Seita.5G330900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 37832338-37832837 Setaria italica
Seita.5G330900 1.0kb upstream 1.0kb upstream 3630 true scaffold_5: 37832838-37836467 Setaria italica
Seita.5G330900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37835468-37836467 Setaria italica
Seita.5G330900 1.0kb downstream 1.0kb downstream 3630 true scaffold_5: 37831838-37835467 Setaria italica
Seita.5G330900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37831838-37832837 Setaria italica
Seita.5G330900 2.0kb upstream 2.0kb upstream 4630 true scaffold_5: 37832838-37837467 Setaria italica
Seita.5G330900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37835468-37837467 Setaria italica
Seita.5G330900 2.0kb downstream 2.0kb downstream 4630 true scaffold_5: 37830838-37835467 Setaria italica
Seita.5G330900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 37830838-37832837 Setaria italica
Seita.5G330900 5.0kb upstream 5.0kb upstream 7630 true scaffold_5: 37832838-37840467 Setaria italica
Seita.5G330900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 37835468-37840467 Setaria italica
Seita.5G330900 5.0kb downstream 5.0kb downstream 7630 true scaffold_5: 37827838-37835467 Setaria italica
Seita.5G330900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 37827838-37832837 Setaria italica
Seita.5G330900 10.0kb upstream 10.0kb upstream 12630 true scaffold_5: 37832838-37845467 Setaria italica
Seita.5G330900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 37835468-37845467 Setaria italica
Seita.5G330900 10.0kb downstream 10.0kb downstream 12630 true scaffold_5: 37822838-37835467 Setaria italica
Seita.5G330900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 37822838-37832837 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194825 5267 Panicoideae View MSA
124580259 5269 Grass View MSA
122043690 5273 Angiosperm View MSA
121347192 5274 Embryophyte View MSA
123380508 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.744        
cufflinks 1.401       High
cufflinks 0.693        
cufflinks 0.484       Low
cufflinks 0.443       Low
cufflinks 1.349       High
cufflinks 1.136        
cufflinks 1.58       High
cufflinks 1.058        
cufflinks 1.736       High
cufflinks 0.771        
cufflinks 0.68        
cufflinks 0.706        
cufflinks 1.383       High
cufflinks 0.969        
cufflinks 0.853        
cufflinks 1.089        
cufflinks 0.716        
cufflinks 0.628        
cufflinks 1.007        

0 Strain