Gene : Seita.5G332500 S. italica v2.2
Defline:  (1 of 6) 2.3.1.20//2.3.1.75 - Diacylglycerol O-acyltransferase / Diglyceride acyltransferase // Long-chain-alcohol O-fatty-acyltransferase / Wax synthase Genomic Order:  3325
Name:  ? Seita.5G332500 Secondary Identifier:  ? PAC:32681317
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5885 Setaria italica pathologic  
Sitalica TRIGLSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G332500 0.5kb upstream 0.5kb upstream 3735 true scaffold_5: 37960785-37964519 Setaria italica
Seita.5G332500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 37964020-37964519 Setaria italica
Seita.5G332500 0.5kb downstream 0.5kb downstream 3735 true scaffold_5: 37960285-37964019 Setaria italica
Seita.5G332500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 37960285-37960784 Setaria italica
Seita.5G332500 1.0kb upstream 1.0kb upstream 4235 true scaffold_5: 37960785-37965019 Setaria italica
Seita.5G332500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 37964020-37965019 Setaria italica
Seita.5G332500 1.0kb downstream 1.0kb downstream 4235 true scaffold_5: 37959785-37964019 Setaria italica
Seita.5G332500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 37959785-37960784 Setaria italica
Seita.5G332500 2.0kb upstream 2.0kb upstream 5235 true scaffold_5: 37960785-37966019 Setaria italica
Seita.5G332500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 37964020-37966019 Setaria italica
Seita.5G332500 2.0kb downstream 2.0kb downstream 5235 true scaffold_5: 37958785-37964019 Setaria italica
Seita.5G332500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 37958785-37960784 Setaria italica
Seita.5G332500 5.0kb upstream 5.0kb upstream 8235 true scaffold_5: 37960785-37969019 Setaria italica
Seita.5G332500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 37964020-37969019 Setaria italica
Seita.5G332500 5.0kb downstream 5.0kb downstream 8235 true scaffold_5: 37955785-37964019 Setaria italica
Seita.5G332500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 37955785-37960784 Setaria italica
Seita.5G332500 10.0kb upstream 10.0kb upstream 13235 true scaffold_5: 37960785-37974019 Setaria italica
Seita.5G332500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 37964020-37974019 Setaria italica
Seita.5G332500 10.0kb downstream 10.0kb downstream 13235 true scaffold_5: 37950785-37964019 Setaria italica
Seita.5G332500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 37950785-37960784 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994016 5273 Angiosperm View MSA
122176824 5267 Panicoideae View MSA
124582504 5269 Grass View MSA
123428993 5275 Viridiplantae View MSA
121351027 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.992        
cufflinks 3.791        
cufflinks 30.507     High  
cufflinks 22.517     High  
cufflinks 37.822     High  
cufflinks 5.826        
cufflinks 21.515     High  
cufflinks 40.507     High High
cufflinks 10.771        
cufflinks 2.162        
cufflinks 2.262        
cufflinks 0.045     Low Low
cufflinks 0.082     Low Low
cufflinks 44.897     High High
cufflinks 0.005     Low Low
cufflinks 7.818        
cufflinks 0.216        
cufflinks 1.485        
cufflinks 37.672     High  
cufflinks 0.021     Low Low

0 Strain