Gene : Seita.5G336000 S. italica v2.2
Defline:  (1 of 1) PF02492//PF02881//PF02978 - CobW/HypB/UreG, nucleotide-binding domain (cobW) // SRP54-type protein, helical bundle domain (SRP54_N) // Signal peptide binding domain (SRP_SPB) Genomic Order:  3360
Name:  ? Seita.5G336000 Secondary Identifier:  ? PAC:32685072
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G336000 0.5kb upstream 0.5kb upstream 4312 true scaffold_5: 38222035-38226346 Setaria italica
Seita.5G336000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38222035-38222534 Setaria italica
Seita.5G336000 0.5kb downstream 0.5kb downstream 4312 true scaffold_5: 38222535-38226846 Setaria italica
Seita.5G336000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38226347-38226846 Setaria italica
Seita.5G336000 1.0kb upstream 1.0kb upstream 4812 true scaffold_5: 38221535-38226346 Setaria italica
Seita.5G336000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38221535-38222534 Setaria italica
Seita.5G336000 1.0kb downstream 1.0kb downstream 4812 true scaffold_5: 38222535-38227346 Setaria italica
Seita.5G336000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38226347-38227346 Setaria italica
Seita.5G336000 2.0kb upstream 2.0kb upstream 5812 true scaffold_5: 38220535-38226346 Setaria italica
Seita.5G336000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38220535-38222534 Setaria italica
Seita.5G336000 2.0kb downstream 2.0kb downstream 5812 true scaffold_5: 38222535-38228346 Setaria italica
Seita.5G336000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38226347-38228346 Setaria italica
Seita.5G336000 5.0kb upstream 5.0kb upstream 8812 true scaffold_5: 38217535-38226346 Setaria italica
Seita.5G336000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38217535-38222534 Setaria italica
Seita.5G336000 5.0kb downstream 5.0kb downstream 8812 true scaffold_5: 38222535-38231346 Setaria italica
Seita.5G336000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38226347-38231346 Setaria italica
Seita.5G336000 10.0kb upstream 10.0kb upstream 13812 true scaffold_5: 38212535-38226346 Setaria italica
Seita.5G336000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38212535-38222534 Setaria italica
Seita.5G336000 10.0kb downstream 10.0kb downstream 13812 true scaffold_5: 38222535-38236346 Setaria italica
Seita.5G336000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38226347-38236346 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185391 5267 Panicoideae View MSA
124586778 5269 Grass View MSA
122048939 5273 Angiosperm View MSA
121348760 5274 Embryophyte View MSA
123426502 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.326     High  
cufflinks 29.656     High  
cufflinks 22.47     High  
cufflinks 19.375     High Low
cufflinks 23.711     High  
cufflinks 30.314     High  
cufflinks 24.379     High  
cufflinks 26.311     High  
cufflinks 31.089     High  
cufflinks 16.832     High Low
cufflinks 32.701     High  
cufflinks 32.773     High  
cufflinks 29.261     High  
cufflinks 23.712     High  
cufflinks 43.688     High High
cufflinks 20.166     High Low
cufflinks 35.253     High High
cufflinks 29.839     High  
cufflinks 22.915     High  
cufflinks 35.756     High High

0 Strain