Gene : Seita.5G336800 S. italica v2.2
Defline:  (1 of 2) PTHR12565//PTHR12565:SF164 - STEROL REGULATORY ELEMENT-BINDING PROTEIN Genomic Order:  3368
Name:  ? Seita.5G336800 Secondary Identifier:  ? PAC:32682492
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G336800 0.5kb upstream 0.5kb upstream 2060 true scaffold_5: 38300261-38302320 Setaria italica
Seita.5G336800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38300261-38300760 Setaria italica
Seita.5G336800 0.5kb downstream 0.5kb downstream 2060 true scaffold_5: 38300761-38302820 Setaria italica
Seita.5G336800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38302321-38302820 Setaria italica
Seita.5G336800 1.0kb upstream 1.0kb upstream 2560 true scaffold_5: 38299761-38302320 Setaria italica
Seita.5G336800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38299761-38300760 Setaria italica
Seita.5G336800 1.0kb downstream 1.0kb downstream 2560 true scaffold_5: 38300761-38303320 Setaria italica
Seita.5G336800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38302321-38303320 Setaria italica
Seita.5G336800 2.0kb upstream 2.0kb upstream 3560 true scaffold_5: 38298761-38302320 Setaria italica
Seita.5G336800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38298761-38300760 Setaria italica
Seita.5G336800 2.0kb downstream 2.0kb downstream 3560 true scaffold_5: 38300761-38304320 Setaria italica
Seita.5G336800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38302321-38304320 Setaria italica
Seita.5G336800 5.0kb upstream 5.0kb upstream 6560 true scaffold_5: 38295761-38302320 Setaria italica
Seita.5G336800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38295761-38300760 Setaria italica
Seita.5G336800 5.0kb downstream 5.0kb downstream 6560 true scaffold_5: 38300761-38307320 Setaria italica
Seita.5G336800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38302321-38307320 Setaria italica
Seita.5G336800 10.0kb upstream 10.0kb upstream 11560 true scaffold_5: 38290761-38302320 Setaria italica
Seita.5G336800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38290761-38300760 Setaria italica
Seita.5G336800 10.0kb downstream 10.0kb downstream 11560 true scaffold_5: 38300761-38312320 Setaria italica
Seita.5G336800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38302321-38312320 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177384 5267 Panicoideae View MSA
124586763 5269 Grass View MSA
122043534 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.857        
cufflinks 0.064     Low Low
cufflinks 0.3        
cufflinks 1.083        
cufflinks 7.08       High
cufflinks 0.011     Low Low
cufflinks 5.849        
cufflinks 1.821        
cufflinks 13.659     High High
cufflinks 1.342        
cufflinks 0.887        
cufflinks 0.89        
cufflinks 0.19        
cufflinks 28.881     High High
cufflinks 0.765        
cufflinks 0.037     Low Low
cufflinks 0.959        
cufflinks 0.117        
cufflinks 1.636        
cufflinks 0.903        

0 Strain