Gene : Seita.5G339200 S. italica v2.2
Defline:  (1 of 2) PTHR11669//PTHR11669:SF12 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT Genomic Order:  3392
Name:  ? Seita.5G339200 Secondary Identifier:  ? PAC:32680771
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G339200 0.5kb upstream 0.5kb upstream 9542 true scaffold_5: 38529615-38539156 Setaria italica
Seita.5G339200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38538657-38539156 Setaria italica
Seita.5G339200 0.5kb downstream 0.5kb downstream 9542 true scaffold_5: 38529115-38538656 Setaria italica
Seita.5G339200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38529115-38529614 Setaria italica
Seita.5G339200 1.0kb upstream 1.0kb upstream 10042 true scaffold_5: 38529615-38539656 Setaria italica
Seita.5G339200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38538657-38539656 Setaria italica
Seita.5G339200 1.0kb downstream 1.0kb downstream 10042 true scaffold_5: 38528615-38538656 Setaria italica
Seita.5G339200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38528615-38529614 Setaria italica
Seita.5G339200 2.0kb upstream 2.0kb upstream 11042 true scaffold_5: 38529615-38540656 Setaria italica
Seita.5G339200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38538657-38540656 Setaria italica
Seita.5G339200 2.0kb downstream 2.0kb downstream 11042 true scaffold_5: 38527615-38538656 Setaria italica
Seita.5G339200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38527615-38529614 Setaria italica
Seita.5G339200 5.0kb upstream 5.0kb upstream 14042 true scaffold_5: 38529615-38543656 Setaria italica
Seita.5G339200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38538657-38543656 Setaria italica
Seita.5G339200 5.0kb downstream 5.0kb downstream 14042 true scaffold_5: 38524615-38538656 Setaria italica
Seita.5G339200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38524615-38529614 Setaria italica
Seita.5G339200 10.0kb upstream 10.0kb upstream 19042 true scaffold_5: 38529615-38548656 Setaria italica
Seita.5G339200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38538657-38548656 Setaria italica
Seita.5G339200 10.0kb downstream 10.0kb downstream 19042 true scaffold_5: 38519615-38538656 Setaria italica
Seita.5G339200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38519615-38529614 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186464 5267 Panicoideae View MSA
124582131 5269 Grass View MSA
122045502 5273 Angiosperm View MSA
121349902 5274 Embryophyte View MSA
123381492 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.732        
cufflinks 7.969       High
cufflinks 0.773       Low
cufflinks 0.387       Low
cufflinks 0.967       Low
cufflinks 7.141        
cufflinks 4.187        
cufflinks 4.359        
cufflinks 4.024        
cufflinks 3.579        
cufflinks 6.622        
cufflinks 3.568        
cufflinks 2.983        
cufflinks 0.867       Low
cufflinks 6.752        
cufflinks 3.749        
cufflinks 4.31        
cufflinks 3.216        
cufflinks 0.489       Low
cufflinks 5.953        

0 Strain