Gene : Seita.5G338000 S. italica v2.2
Defline:  (1 of 2) 3.1.3.2//3.1.3.41//3.1.3.60 - Acid phosphatase / Phosphomonoesterase // Genomic Order:  3380
Name:  ? Seita.5G338000 Secondary Identifier:  ? PAC:32684554
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5083 Setaria italica pathologic  
Sitalica PWY-6348 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G338000 0.5kb upstream 0.5kb upstream 4752 true scaffold_5: 38411457-38416208 Setaria italica
Seita.5G338000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38415709-38416208 Setaria italica
Seita.5G338000 0.5kb downstream 0.5kb downstream 4752 true scaffold_5: 38410957-38415708 Setaria italica
Seita.5G338000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38410957-38411456 Setaria italica
Seita.5G338000 1.0kb upstream 1.0kb upstream 5252 true scaffold_5: 38411457-38416708 Setaria italica
Seita.5G338000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38415709-38416708 Setaria italica
Seita.5G338000 1.0kb downstream 1.0kb downstream 5252 true scaffold_5: 38410457-38415708 Setaria italica
Seita.5G338000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38410457-38411456 Setaria italica
Seita.5G338000 2.0kb upstream 2.0kb upstream 6252 true scaffold_5: 38411457-38417708 Setaria italica
Seita.5G338000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38415709-38417708 Setaria italica
Seita.5G338000 2.0kb downstream 2.0kb downstream 6252 true scaffold_5: 38409457-38415708 Setaria italica
Seita.5G338000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38409457-38411456 Setaria italica
Seita.5G338000 5.0kb upstream 5.0kb upstream 9252 true scaffold_5: 38411457-38420708 Setaria italica
Seita.5G338000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38415709-38420708 Setaria italica
Seita.5G338000 5.0kb downstream 5.0kb downstream 9252 true scaffold_5: 38406457-38415708 Setaria italica
Seita.5G338000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38406457-38411456 Setaria italica
Seita.5G338000 10.0kb upstream 10.0kb upstream 14252 true scaffold_5: 38411457-38425708 Setaria italica
Seita.5G338000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38415709-38425708 Setaria italica
Seita.5G338000 10.0kb downstream 10.0kb downstream 14252 true scaffold_5: 38401457-38415708 Setaria italica
Seita.5G338000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38401457-38411456 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182138 5267 Panicoideae View MSA
124582481 5269 Grass View MSA
122041724 5273 Angiosperm View MSA
121351600 5274 Embryophyte View MSA
123426131 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.405        
cufflinks 9.575        
cufflinks 5.204        
cufflinks 4.674        
cufflinks 6.416        
cufflinks 9.711        
cufflinks 4.636        
cufflinks 5.425        
cufflinks 6.77        
cufflinks 5.559        
cufflinks 8.021        
cufflinks 51.821     High High
cufflinks 14.24     High  
cufflinks 9.243        
cufflinks 7.528        
cufflinks 3.264       Low
cufflinks 31.434     High High
cufflinks 3.365       Low
cufflinks 3.629        
cufflinks 53.44     High High

0 Strain