Gene : Seita.5G338200 S. italica v2.2
Genomic Order:  3382 Name:  ? Seita.5G338200
Secondary Identifier:  ? PAC:32684958
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G338200 0.5kb upstream 0.5kb upstream 4303 true scaffold_5: 38420501-38424803 Setaria italica
Seita.5G338200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38420501-38421000 Setaria italica
Seita.5G338200 0.5kb downstream 0.5kb downstream 4303 true scaffold_5: 38421001-38425303 Setaria italica
Seita.5G338200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38424804-38425303 Setaria italica
Seita.5G338200 1.0kb upstream 1.0kb upstream 4803 true scaffold_5: 38420001-38424803 Setaria italica
Seita.5G338200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38420001-38421000 Setaria italica
Seita.5G338200 1.0kb downstream 1.0kb downstream 4803 true scaffold_5: 38421001-38425803 Setaria italica
Seita.5G338200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38424804-38425803 Setaria italica
Seita.5G338200 2.0kb upstream 2.0kb upstream 5803 true scaffold_5: 38419001-38424803 Setaria italica
Seita.5G338200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38419001-38421000 Setaria italica
Seita.5G338200 2.0kb downstream 2.0kb downstream 5803 true scaffold_5: 38421001-38426803 Setaria italica
Seita.5G338200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38424804-38426803 Setaria italica
Seita.5G338200 5.0kb upstream 5.0kb upstream 8803 true scaffold_5: 38416001-38424803 Setaria italica
Seita.5G338200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38416001-38421000 Setaria italica
Seita.5G338200 5.0kb downstream 5.0kb downstream 8803 true scaffold_5: 38421001-38429803 Setaria italica
Seita.5G338200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38424804-38429803 Setaria italica
Seita.5G338200 10.0kb upstream 10.0kb upstream 13803 true scaffold_5: 38411001-38424803 Setaria italica
Seita.5G338200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38411001-38421000 Setaria italica
Seita.5G338200 10.0kb downstream 10.0kb downstream 13803 true scaffold_5: 38421001-38434803 Setaria italica
Seita.5G338200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38424804-38434803 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178109 5267 Panicoideae View MSA
124583625 5269 Grass View MSA
122043379 5273 Angiosperm View MSA
121310114 5274 Embryophyte View MSA
123427495 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.094        
cufflinks 5.617        
cufflinks 0.054     Low Low
cufflinks 0.172       Low
cufflinks 0.353        
cufflinks 5.664        
cufflinks 4.56        
cufflinks 2.777        
cufflinks 3.707        
cufflinks 6.127        
cufflinks 5.836        
cufflinks 1.95        
cufflinks 7.526        
cufflinks 0.133       Low
cufflinks 11.378       High
cufflinks 1.567        
cufflinks 3.151        
cufflinks 0.776        
cufflinks 0.132       Low
cufflinks 7.193        

0 Strain