Gene : Seita.5G338600 S. italica v2.2
Defline:  (1 of 1) PTHR11081:SF8 - EXONUCLEASE 1 Genomic Order:  3386
Name:  ? Seita.5G338600 Secondary Identifier:  ? PAC:32684303
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G338600 0.5kb upstream 0.5kb upstream 7038 true scaffold_5: 38480054-38487091 Setaria italica
Seita.5G338600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38480054-38480553 Setaria italica
Seita.5G338600 0.5kb downstream 0.5kb downstream 7038 true scaffold_5: 38480554-38487591 Setaria italica
Seita.5G338600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38487092-38487591 Setaria italica
Seita.5G338600 1.0kb upstream 1.0kb upstream 7538 true scaffold_5: 38479554-38487091 Setaria italica
Seita.5G338600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38479554-38480553 Setaria italica
Seita.5G338600 1.0kb downstream 1.0kb downstream 7538 true scaffold_5: 38480554-38488091 Setaria italica
Seita.5G338600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38487092-38488091 Setaria italica
Seita.5G338600 2.0kb upstream 2.0kb upstream 8538 true scaffold_5: 38478554-38487091 Setaria italica
Seita.5G338600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38478554-38480553 Setaria italica
Seita.5G338600 2.0kb downstream 2.0kb downstream 8538 true scaffold_5: 38480554-38489091 Setaria italica
Seita.5G338600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38487092-38489091 Setaria italica
Seita.5G338600 5.0kb upstream 5.0kb upstream 11538 true scaffold_5: 38475554-38487091 Setaria italica
Seita.5G338600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38475554-38480553 Setaria italica
Seita.5G338600 5.0kb downstream 5.0kb downstream 11538 true scaffold_5: 38480554-38492091 Setaria italica
Seita.5G338600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38487092-38492091 Setaria italica
Seita.5G338600 10.0kb upstream 10.0kb upstream 16538 true scaffold_5: 38470554-38487091 Setaria italica
Seita.5G338600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38470554-38480553 Setaria italica
Seita.5G338600 10.0kb downstream 10.0kb downstream 16538 true scaffold_5: 38480554-38497091 Setaria italica
Seita.5G338600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38487092-38497091 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041390 5273 Angiosperm View MSA
122179865 5267 Panicoideae View MSA
124576222 5269 Grass View MSA
121347446 5274 Embryophyte View MSA
123380554 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.656        
cufflinks 2.197       High
cufflinks 0.034     Low Low
cufflinks 0.023     Low Low
cufflinks 0.031     Low Low
cufflinks 1.986       High
cufflinks 0.879        
cufflinks 0.925        
cufflinks 0.637        
cufflinks 0.521        
cufflinks 0.893        
cufflinks 1.09        
cufflinks 0.651        
cufflinks 0.025     Low Low
cufflinks 1.789        
cufflinks 0.134        
cufflinks 1.414        
cufflinks 0.054     Low Low
cufflinks 0.047     Low Low
cufflinks 1.626        

0 Strain