Gene : Seita.5G340800 S. italica v2.2
Defline:  (1 of 2) PTHR12358//PTHR12358:SF42 - SPHINGOSINE KINASE Genomic Order:  3408
Name:  ? Seita.5G340800 Secondary Identifier:  ? PAC:32683038
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5129 Setaria italica pathologic  
Sitalica PWY-6483 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G340800 0.5kb upstream 0.5kb upstream 4465 true scaffold_5: 38664471-38668935 Setaria italica
Seita.5G340800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38668436-38668935 Setaria italica
Seita.5G340800 0.5kb downstream 0.5kb downstream 4465 true scaffold_5: 38663971-38668435 Setaria italica
Seita.5G340800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38663971-38664470 Setaria italica
Seita.5G340800 1.0kb upstream 1.0kb upstream 4965 true scaffold_5: 38664471-38669435 Setaria italica
Seita.5G340800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38668436-38669435 Setaria italica
Seita.5G340800 1.0kb downstream 1.0kb downstream 4965 true scaffold_5: 38663471-38668435 Setaria italica
Seita.5G340800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38663471-38664470 Setaria italica
Seita.5G340800 2.0kb upstream 2.0kb upstream 5965 true scaffold_5: 38664471-38670435 Setaria italica
Seita.5G340800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38668436-38670435 Setaria italica
Seita.5G340800 2.0kb downstream 2.0kb downstream 5965 true scaffold_5: 38662471-38668435 Setaria italica
Seita.5G340800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38662471-38664470 Setaria italica
Seita.5G340800 5.0kb upstream 5.0kb upstream 8965 true scaffold_5: 38664471-38673435 Setaria italica
Seita.5G340800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38668436-38673435 Setaria italica
Seita.5G340800 5.0kb downstream 5.0kb downstream 8965 true scaffold_5: 38659471-38668435 Setaria italica
Seita.5G340800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38659471-38664470 Setaria italica
Seita.5G340800 10.0kb upstream 10.0kb upstream 13965 true scaffold_5: 38664471-38678435 Setaria italica
Seita.5G340800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38668436-38678435 Setaria italica
Seita.5G340800 10.0kb downstream 10.0kb downstream 13965 true scaffold_5: 38654471-38668435 Setaria italica
Seita.5G340800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38654471-38664470 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176509 5267 Panicoideae View MSA
124568835 5269 Grass View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.657        
cufflinks 1.741        
cufflinks 0.412        
cufflinks 0.197       Low
cufflinks 0.101       Low
cufflinks 1.927        
cufflinks 0.721        
cufflinks 0.581        
cufflinks 0.12       Low
cufflinks 4.766        
cufflinks 4.244        
cufflinks 21.52     High High
cufflinks 16.864     High High
cufflinks 0.574        
cufflinks 8.375        
cufflinks 1.342        
cufflinks 4.804        
cufflinks 11.297     High High
cufflinks 1.854        
cufflinks 10.412       High

0 Strain