Gene : Seita.5G340400 S. italica v2.2
Defline:  (1 of 1) PTHR34053:SF1 - PROTEIN ULTRAPETALA 1-RELATED Genomic Order:  3404
Name:  ? Seita.5G340400 Secondary Identifier:  ? PAC:32681492
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G340400 0.5kb upstream 0.5kb upstream 4834 true scaffold_5: 38641038-38645871 Setaria italica
Seita.5G340400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 38645372-38645871 Setaria italica
Seita.5G340400 0.5kb downstream 0.5kb downstream 4834 true scaffold_5: 38640538-38645371 Setaria italica
Seita.5G340400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 38640538-38641037 Setaria italica
Seita.5G340400 1.0kb upstream 1.0kb upstream 5334 true scaffold_5: 38641038-38646371 Setaria italica
Seita.5G340400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 38645372-38646371 Setaria italica
Seita.5G340400 1.0kb downstream 1.0kb downstream 5334 true scaffold_5: 38640038-38645371 Setaria italica
Seita.5G340400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 38640038-38641037 Setaria italica
Seita.5G340400 2.0kb upstream 2.0kb upstream 6334 true scaffold_5: 38641038-38647371 Setaria italica
Seita.5G340400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 38645372-38647371 Setaria italica
Seita.5G340400 2.0kb downstream 2.0kb downstream 6334 true scaffold_5: 38639038-38645371 Setaria italica
Seita.5G340400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 38639038-38641037 Setaria italica
Seita.5G340400 5.0kb upstream 5.0kb upstream 9334 true scaffold_5: 38641038-38650371 Setaria italica
Seita.5G340400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 38645372-38650371 Setaria italica
Seita.5G340400 5.0kb downstream 5.0kb downstream 9334 true scaffold_5: 38636038-38645371 Setaria italica
Seita.5G340400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 38636038-38641037 Setaria italica
Seita.5G340400 10.0kb upstream 10.0kb upstream 14334 true scaffold_5: 38641038-38655371 Setaria italica
Seita.5G340400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 38645372-38655371 Setaria italica
Seita.5G340400 10.0kb downstream 10.0kb downstream 14334 true scaffold_5: 38631038-38645371 Setaria italica
Seita.5G340400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 38631038-38641037 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187231 5267 Panicoideae View MSA
124571679 5269 Grass View MSA
122043441 5273 Angiosperm View MSA
121310126 5274 Embryophyte View MSA
123347700 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.409        
cufflinks 1.327        
cufflinks 0.107       Low
cufflinks 0.093       Low
cufflinks 0.207        
cufflinks 1.502        
cufflinks 0.612        
cufflinks 1.106        
cufflinks 1.067        
cufflinks 1.316        
cufflinks 2.141       High
cufflinks 0.83        
cufflinks 1.312        
cufflinks 0.161       Low
cufflinks 1.214        
cufflinks 0.191       Low
cufflinks 1.111        
cufflinks 0.126       Low
cufflinks 0.235        
cufflinks 1.199        

0 Strain