Gene : Seita.5G347500 S. italica v2.2
Defline:  (1 of 1) 1.1.1.157 - 3-hydroxybutyryl-CoA dehydrogenase / BHBD Genomic Order:  3475
Name:  ? Seita.5G347500 Secondary Identifier:  ? PAC:32685641
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G347500 0.5kb upstream 0.5kb upstream 2347 true scaffold_5: 39108538-39110884 Setaria italica
Seita.5G347500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39108538-39109037 Setaria italica
Seita.5G347500 0.5kb downstream 0.5kb downstream 2347 true scaffold_5: 39109038-39111384 Setaria italica
Seita.5G347500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39110885-39111384 Setaria italica
Seita.5G347500 1.0kb upstream 1.0kb upstream 2847 true scaffold_5: 39108038-39110884 Setaria italica
Seita.5G347500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39108038-39109037 Setaria italica
Seita.5G347500 1.0kb downstream 1.0kb downstream 2847 true scaffold_5: 39109038-39111884 Setaria italica
Seita.5G347500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39110885-39111884 Setaria italica
Seita.5G347500 2.0kb upstream 2.0kb upstream 3847 true scaffold_5: 39107038-39110884 Setaria italica
Seita.5G347500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39107038-39109037 Setaria italica
Seita.5G347500 2.0kb downstream 2.0kb downstream 3847 true scaffold_5: 39109038-39112884 Setaria italica
Seita.5G347500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39110885-39112884 Setaria italica
Seita.5G347500 5.0kb upstream 5.0kb upstream 6847 true scaffold_5: 39104038-39110884 Setaria italica
Seita.5G347500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39104038-39109037 Setaria italica
Seita.5G347500 5.0kb downstream 5.0kb downstream 6847 true scaffold_5: 39109038-39115884 Setaria italica
Seita.5G347500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39110885-39115884 Setaria italica
Seita.5G347500 10.0kb upstream 10.0kb upstream 11847 true scaffold_5: 39099038-39110884 Setaria italica
Seita.5G347500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39099038-39109037 Setaria italica
Seita.5G347500 10.0kb downstream 10.0kb downstream 11847 true scaffold_5: 39109038-39120884 Setaria italica
Seita.5G347500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39110885-39120884 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175719 5267 Panicoideae View MSA
124570909 5269 Grass View MSA
122042750 5273 Angiosperm View MSA
121344136 5274 Embryophyte View MSA
123426191 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.896     High  
cufflinks 5.473       Low
cufflinks 14.994     High  
cufflinks 13.976     High  
cufflinks 8.511        
cufflinks 5.873       Low
cufflinks 4.305       Low
cufflinks 7.967        
cufflinks 4.723       Low
cufflinks 25.538     High High
cufflinks 13.253        
cufflinks 18.476     High  
cufflinks 18.574     High  
cufflinks 15.996     High  
cufflinks 17.512     High  
cufflinks 5.157       Low
cufflinks 17.583     High  
cufflinks 16.334     High  
cufflinks 14.977     High  
cufflinks 12.38        

0 Strain