Gene : Seita.5G350800 S. italica v2.2
Defline:  (1 of 4) PTHR23334 - CCAAT/ENHANCER BINDING PROTEIN Genomic Order:  3508
Name:  ? Seita.5G350800 Secondary Identifier:  ? PAC:32683340
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G350800 0.5kb upstream 0.5kb upstream 2267 true scaffold_5: 39301838-39304104 Setaria italica
Seita.5G350800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39301838-39302337 Setaria italica
Seita.5G350800 0.5kb downstream 0.5kb downstream 2267 true scaffold_5: 39302338-39304604 Setaria italica
Seita.5G350800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39304105-39304604 Setaria italica
Seita.5G350800 1.0kb upstream 1.0kb upstream 2767 true scaffold_5: 39301338-39304104 Setaria italica
Seita.5G350800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39301338-39302337 Setaria italica
Seita.5G350800 1.0kb downstream 1.0kb downstream 2767 true scaffold_5: 39302338-39305104 Setaria italica
Seita.5G350800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39304105-39305104 Setaria italica
Seita.5G350800 2.0kb upstream 2.0kb upstream 3767 true scaffold_5: 39300338-39304104 Setaria italica
Seita.5G350800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39300338-39302337 Setaria italica
Seita.5G350800 2.0kb downstream 2.0kb downstream 3767 true scaffold_5: 39302338-39306104 Setaria italica
Seita.5G350800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39304105-39306104 Setaria italica
Seita.5G350800 5.0kb upstream 5.0kb upstream 6767 true scaffold_5: 39297338-39304104 Setaria italica
Seita.5G350800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39297338-39302337 Setaria italica
Seita.5G350800 5.0kb downstream 5.0kb downstream 6767 true scaffold_5: 39302338-39309104 Setaria italica
Seita.5G350800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39304105-39309104 Setaria italica
Seita.5G350800 10.0kb upstream 10.0kb upstream 11767 true scaffold_5: 39292338-39304104 Setaria italica
Seita.5G350800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39292338-39302337 Setaria italica
Seita.5G350800 10.0kb downstream 10.0kb downstream 11767 true scaffold_5: 39302338-39314104 Setaria italica
Seita.5G350800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39304105-39314104 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184310 5267 Panicoideae View MSA
124581802 5269 Grass View MSA
122050154 5273 Angiosperm View MSA
121349674 5274 Embryophyte View MSA
123381395 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.617        
cufflinks 1.95        
cufflinks 7.459       High
cufflinks 3.28        
cufflinks 2.23        
cufflinks 1.885        
cufflinks 1.083        
cufflinks 3.797        
cufflinks 0.763        
cufflinks 0.156     Low Low
cufflinks 0.187        
cufflinks 0.033     Low Low
cufflinks 0.123     Low Low
cufflinks 10.591       High
cufflinks 0.174        
cufflinks 3.172        
cufflinks 0.541        
cufflinks 0.359        
cufflinks 3.885        
cufflinks 0.105     Low Low

0 Strain