Gene : Seita.5G353300 S. italica v2.2
Defline:  (1 of 1) PTHR31696:SF4 - EXPRESSED PROTEIN Genomic Order:  3533
Name:  ? Seita.5G353300 Secondary Identifier:  ? PAC:32683479
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G353300 0.5kb upstream 0.5kb upstream 1319 true scaffold_5: 39474392-39475710 Setaria italica
Seita.5G353300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39474392-39474891 Setaria italica
Seita.5G353300 0.5kb downstream 0.5kb downstream 1319 true scaffold_5: 39474892-39476210 Setaria italica
Seita.5G353300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39475711-39476210 Setaria italica
Seita.5G353300 1.0kb upstream 1.0kb upstream 1819 true scaffold_5: 39473892-39475710 Setaria italica
Seita.5G353300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39473892-39474891 Setaria italica
Seita.5G353300 1.0kb downstream 1.0kb downstream 1819 true scaffold_5: 39474892-39476710 Setaria italica
Seita.5G353300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39475711-39476710 Setaria italica
Seita.5G353300 2.0kb upstream 2.0kb upstream 2819 true scaffold_5: 39472892-39475710 Setaria italica
Seita.5G353300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39472892-39474891 Setaria italica
Seita.5G353300 2.0kb downstream 2.0kb downstream 2819 true scaffold_5: 39474892-39477710 Setaria italica
Seita.5G353300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39475711-39477710 Setaria italica
Seita.5G353300 5.0kb upstream 5.0kb upstream 5819 true scaffold_5: 39469892-39475710 Setaria italica
Seita.5G353300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39469892-39474891 Setaria italica
Seita.5G353300 5.0kb downstream 5.0kb downstream 5819 true scaffold_5: 39474892-39480710 Setaria italica
Seita.5G353300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39475711-39480710 Setaria italica
Seita.5G353300 10.0kb upstream 10.0kb upstream 10819 true scaffold_5: 39464892-39475710 Setaria italica
Seita.5G353300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39464892-39474891 Setaria italica
Seita.5G353300 10.0kb downstream 10.0kb downstream 10819 true scaffold_5: 39474892-39485710 Setaria italica
Seita.5G353300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39475711-39485710 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189375 5267 Panicoideae View MSA
124572881 5269 Grass View MSA
122044454 5273 Angiosperm View MSA
121349765 5274 Embryophyte View MSA
123381434 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.036     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.337        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.365        
cufflinks 0.369        
cufflinks 0.103     Low  
cufflinks 0.331        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.631       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.483        

0 Strain