Gene : Seita.5G353100 S. italica v2.2
Defline:  (1 of 2) PTHR12917//PTHR12917:SF20 - ASPARTYL PROTEASE DDI-RELATED Genomic Order:  3531
Name:  ? Seita.5G353100 Secondary Identifier:  ? PAC:32681322
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G353100 0.5kb upstream 0.5kb upstream 4840 true scaffold_5: 39451464-39456303 Setaria italica
Seita.5G353100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39455804-39456303 Setaria italica
Seita.5G353100 0.5kb downstream 0.5kb downstream 4840 true scaffold_5: 39450964-39455803 Setaria italica
Seita.5G353100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39450964-39451463 Setaria italica
Seita.5G353100 1.0kb upstream 1.0kb upstream 5340 true scaffold_5: 39451464-39456803 Setaria italica
Seita.5G353100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39455804-39456803 Setaria italica
Seita.5G353100 1.0kb downstream 1.0kb downstream 5340 true scaffold_5: 39450464-39455803 Setaria italica
Seita.5G353100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39450464-39451463 Setaria italica
Seita.5G353100 2.0kb upstream 2.0kb upstream 6340 true scaffold_5: 39451464-39457803 Setaria italica
Seita.5G353100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39455804-39457803 Setaria italica
Seita.5G353100 2.0kb downstream 2.0kb downstream 6340 true scaffold_5: 39449464-39455803 Setaria italica
Seita.5G353100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39449464-39451463 Setaria italica
Seita.5G353100 5.0kb upstream 5.0kb upstream 9340 true scaffold_5: 39451464-39460803 Setaria italica
Seita.5G353100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39455804-39460803 Setaria italica
Seita.5G353100 5.0kb downstream 5.0kb downstream 9340 true scaffold_5: 39446464-39455803 Setaria italica
Seita.5G353100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39446464-39451463 Setaria italica
Seita.5G353100 10.0kb upstream 10.0kb upstream 14340 true scaffold_5: 39451464-39465803 Setaria italica
Seita.5G353100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39455804-39465803 Setaria italica
Seita.5G353100 10.0kb downstream 10.0kb downstream 14340 true scaffold_5: 39441464-39455803 Setaria italica
Seita.5G353100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39441464-39451463 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182447 5267 Panicoideae View MSA
124568976 5269 Grass View MSA
122046571 5273 Angiosperm View MSA
121349564 5274 Embryophyte View MSA
123424365 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.935        
cufflinks 5.411        
cufflinks 1.135       Low
cufflinks 1.631       Low
cufflinks 1.544       Low
cufflinks 5.174        
cufflinks 3.185        
cufflinks 3.98        
cufflinks 2.679        
cufflinks 6.326       High
cufflinks 4.244        
cufflinks 4.588        
cufflinks 5.012        
cufflinks 1.785       Low
cufflinks 5.243        
cufflinks 2.628        
cufflinks 5.078        
cufflinks 2.659        
cufflinks 1.669       Low
cufflinks 5.372        

0 Strain