Gene : Seita.5G352400 S. italica v2.2
Defline:  (1 of 1) PTHR14503:SF3 - 50S RIBOSOMAL PROTEIN L34, CHLOROPLASTIC Genomic Order:  3524
Name:  ? Seita.5G352400 Secondary Identifier:  ? PAC:32682793
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G352400 0.5kb upstream 0.5kb upstream 2754 true scaffold_5: 39414148-39416901 Setaria italica
Seita.5G352400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39416402-39416901 Setaria italica
Seita.5G352400 0.5kb downstream 0.5kb downstream 2754 true scaffold_5: 39413648-39416401 Setaria italica
Seita.5G352400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39413648-39414147 Setaria italica
Seita.5G352400 1.0kb upstream 1.0kb upstream 3254 true scaffold_5: 39414148-39417401 Setaria italica
Seita.5G352400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39416402-39417401 Setaria italica
Seita.5G352400 1.0kb downstream 1.0kb downstream 3254 true scaffold_5: 39413148-39416401 Setaria italica
Seita.5G352400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39413148-39414147 Setaria italica
Seita.5G352400 2.0kb upstream 2.0kb upstream 4254 true scaffold_5: 39414148-39418401 Setaria italica
Seita.5G352400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39416402-39418401 Setaria italica
Seita.5G352400 2.0kb downstream 2.0kb downstream 4254 true scaffold_5: 39412148-39416401 Setaria italica
Seita.5G352400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39412148-39414147 Setaria italica
Seita.5G352400 5.0kb upstream 5.0kb upstream 7254 true scaffold_5: 39414148-39421401 Setaria italica
Seita.5G352400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39416402-39421401 Setaria italica
Seita.5G352400 5.0kb downstream 5.0kb downstream 7254 true scaffold_5: 39409148-39416401 Setaria italica
Seita.5G352400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39409148-39414147 Setaria italica
Seita.5G352400 10.0kb upstream 10.0kb upstream 12254 true scaffold_5: 39414148-39426401 Setaria italica
Seita.5G352400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39416402-39426401 Setaria italica
Seita.5G352400 10.0kb downstream 10.0kb downstream 12254 true scaffold_5: 39404148-39416401 Setaria italica
Seita.5G352400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39404148-39414147 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181427 5267 Panicoideae View MSA
124588773 5269 Grass View MSA
122044582 5273 Angiosperm View MSA
121344313 5274 Embryophyte View MSA
123425891 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.242     High  
cufflinks 18.568     High  
cufflinks 25.529     High  
cufflinks 30.858     High  
cufflinks 71.561     High High
cufflinks 19.894     High  
cufflinks 57.065     High  
cufflinks 133.248     High High
cufflinks 123.122     High High
cufflinks 21.357     High  
cufflinks 12.081        
cufflinks 1.012       Low
cufflinks 2.25       Low
cufflinks 29.737     High  
cufflinks 0.607       Low
cufflinks 37.843     High  
cufflinks 1.131       Low
cufflinks 7.643        
cufflinks 29.947     High  
cufflinks 1.042       Low

0 Strain