Gene : Seita.5G352700 S. italica v2.2
Defline:  (1 of 2) PTHR10177//PTHR10177:SF241 - CYCLINE Genomic Order:  3527
Name:  ? Seita.5G352700 Secondary Identifier:  ? PAC:32681612
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G352700 0.5kb upstream 0.5kb upstream 3516 true scaffold_5: 39431327-39434842 Setaria italica
Seita.5G352700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39434343-39434842 Setaria italica
Seita.5G352700 0.5kb downstream 0.5kb downstream 3516 true scaffold_5: 39430827-39434342 Setaria italica
Seita.5G352700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39430827-39431326 Setaria italica
Seita.5G352700 1.0kb upstream 1.0kb upstream 4016 true scaffold_5: 39431327-39435342 Setaria italica
Seita.5G352700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39434343-39435342 Setaria italica
Seita.5G352700 1.0kb downstream 1.0kb downstream 4016 true scaffold_5: 39430327-39434342 Setaria italica
Seita.5G352700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39430327-39431326 Setaria italica
Seita.5G352700 2.0kb upstream 2.0kb upstream 5016 true scaffold_5: 39431327-39436342 Setaria italica
Seita.5G352700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39434343-39436342 Setaria italica
Seita.5G352700 2.0kb downstream 2.0kb downstream 5016 true scaffold_5: 39429327-39434342 Setaria italica
Seita.5G352700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39429327-39431326 Setaria italica
Seita.5G352700 5.0kb upstream 5.0kb upstream 8016 true scaffold_5: 39431327-39439342 Setaria italica
Seita.5G352700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39434343-39439342 Setaria italica
Seita.5G352700 5.0kb downstream 5.0kb downstream 8016 true scaffold_5: 39426327-39434342 Setaria italica
Seita.5G352700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39426327-39431326 Setaria italica
Seita.5G352700 10.0kb upstream 10.0kb upstream 13016 true scaffold_5: 39431327-39444342 Setaria italica
Seita.5G352700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39434343-39444342 Setaria italica
Seita.5G352700 10.0kb downstream 10.0kb downstream 13016 true scaffold_5: 39421327-39434342 Setaria italica
Seita.5G352700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39421327-39431326 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179510 5267 Panicoideae View MSA
124582720 5269 Grass View MSA
122046684 5273 Angiosperm View MSA
123429011 5275 Viridiplantae View MSA
121349995 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.72        
cufflinks 8.681        
cufflinks 0.037     Low Low
cufflinks 0.012     Low Low
cufflinks 0.009     Low Low
cufflinks 8.079        
cufflinks 6.918        
cufflinks 12.264        
cufflinks 7.384        
cufflinks 6.828        
cufflinks 5.725        
cufflinks 5.593        
cufflinks 3.773        
cufflinks 0.063     Low Low
cufflinks 9.349        
cufflinks 0.492        
cufflinks 8.682        
cufflinks 0.26        
cufflinks 0.044     Low Low
cufflinks 9.97        

0 Strain