Gene : Seita.5G352900 S. italica v2.2
Defline:  (1 of 5) PTHR10535 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 Genomic Order:  3529
Name:  ? Seita.5G352900 Secondary Identifier:  ? PAC:32681517
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G352900 0.5kb upstream 0.5kb upstream 3156 true scaffold_5: 39443679-39446834 Setaria italica
Seita.5G352900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39446335-39446834 Setaria italica
Seita.5G352900 0.5kb downstream 0.5kb downstream 3156 true scaffold_5: 39443179-39446334 Setaria italica
Seita.5G352900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39443179-39443678 Setaria italica
Seita.5G352900 1.0kb upstream 1.0kb upstream 3656 true scaffold_5: 39443679-39447334 Setaria italica
Seita.5G352900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39446335-39447334 Setaria italica
Seita.5G352900 1.0kb downstream 1.0kb downstream 3656 true scaffold_5: 39442679-39446334 Setaria italica
Seita.5G352900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39442679-39443678 Setaria italica
Seita.5G352900 2.0kb upstream 2.0kb upstream 4656 true scaffold_5: 39443679-39448334 Setaria italica
Seita.5G352900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39446335-39448334 Setaria italica
Seita.5G352900 2.0kb downstream 2.0kb downstream 4656 true scaffold_5: 39441679-39446334 Setaria italica
Seita.5G352900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39441679-39443678 Setaria italica
Seita.5G352900 5.0kb upstream 5.0kb upstream 7656 true scaffold_5: 39443679-39451334 Setaria italica
Seita.5G352900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39446335-39451334 Setaria italica
Seita.5G352900 5.0kb downstream 5.0kb downstream 7656 true scaffold_5: 39438679-39446334 Setaria italica
Seita.5G352900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39438679-39443678 Setaria italica
Seita.5G352900 10.0kb upstream 10.0kb upstream 12656 true scaffold_5: 39443679-39456334 Setaria italica
Seita.5G352900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39446335-39456334 Setaria italica
Seita.5G352900 10.0kb downstream 10.0kb downstream 12656 true scaffold_5: 39433679-39446334 Setaria italica
Seita.5G352900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39433679-39443678 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189442 5267 Panicoideae View MSA
124580688 5269 Grass View MSA
122044572 5273 Angiosperm View MSA
121347059 5274 Embryophyte View MSA
123424632 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.938     High  
cufflinks 13.861     High  
cufflinks 24.851     High  
cufflinks 28.551     High  
cufflinks 22.396     High  
cufflinks 11.196       Low
cufflinks 12.024       Low
cufflinks 20.771     High  
cufflinks 16.384     High  
cufflinks 25.971     High  
cufflinks 22.0     High  
cufflinks 25.243     High  
cufflinks 30.982     High High
cufflinks 19.802     High  
cufflinks 24.111     High  
cufflinks 11.976     High Low
cufflinks 30.901     High High
cufflinks 8.845       Low
cufflinks 24.852     High  
cufflinks 24.184     High  

0 Strain