Gene : Seita.5G355400 S. italica v2.2
Genomic Order:  3554 Name:  ? Seita.5G355400
Secondary Identifier:  ? PAC:32683964
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G355400 0.5kb upstream 0.5kb upstream 6069 true scaffold_5: 39649324-39655392 Setaria italica
Seita.5G355400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39649324-39649823 Setaria italica
Seita.5G355400 0.5kb downstream 0.5kb downstream 6069 true scaffold_5: 39649824-39655892 Setaria italica
Seita.5G355400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39655393-39655892 Setaria italica
Seita.5G355400 1.0kb upstream 1.0kb upstream 6569 true scaffold_5: 39648824-39655392 Setaria italica
Seita.5G355400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39648824-39649823 Setaria italica
Seita.5G355400 1.0kb downstream 1.0kb downstream 6569 true scaffold_5: 39649824-39656392 Setaria italica
Seita.5G355400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39655393-39656392 Setaria italica
Seita.5G355400 2.0kb upstream 2.0kb upstream 7569 true scaffold_5: 39647824-39655392 Setaria italica
Seita.5G355400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39647824-39649823 Setaria italica
Seita.5G355400 2.0kb downstream 2.0kb downstream 7569 true scaffold_5: 39649824-39657392 Setaria italica
Seita.5G355400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39655393-39657392 Setaria italica
Seita.5G355400 5.0kb upstream 5.0kb upstream 10569 true scaffold_5: 39644824-39655392 Setaria italica
Seita.5G355400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39644824-39649823 Setaria italica
Seita.5G355400 5.0kb downstream 5.0kb downstream 10569 true scaffold_5: 39649824-39660392 Setaria italica
Seita.5G355400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39655393-39660392 Setaria italica
Seita.5G355400 10.0kb upstream 10.0kb upstream 15569 true scaffold_5: 39639824-39655392 Setaria italica
Seita.5G355400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39639824-39649823 Setaria italica
Seita.5G355400 10.0kb downstream 10.0kb downstream 15569 true scaffold_5: 39649824-39665392 Setaria italica
Seita.5G355400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39655393-39665392 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122174955 5267 Panicoideae View MSA
124577395 5269 Grass View MSA
122043961 5273 Angiosperm View MSA
121310217 5274 Embryophyte View MSA
123347767 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.518     High High
cufflinks 8.782        
cufflinks 3.951       Low
cufflinks 2.922       Low
cufflinks 2.97       Low
cufflinks 8.374        
cufflinks 8.197        
cufflinks 3.725       Low
cufflinks 3.565       Low
cufflinks 5.484        
cufflinks 19.6     High High
cufflinks 12.882        
cufflinks 14.112     High High
cufflinks 5.002        
cufflinks 15.499     High High
cufflinks 8.58        
cufflinks 8.919        
cufflinks 10.935        
cufflinks 3.567       Low
cufflinks 12.94        

0 Strain