Gene : Seita.5G355300 S. italica v2.2
Defline:  (1 of 1) PTHR10641:SF475 - MYB TRANSCRIPTION FACTOR-RELATED Genomic Order:  3553
Name:  ? Seita.5G355300 Secondary Identifier:  ? PAC:32680717
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G355300 0.5kb upstream 0.5kb upstream 4320 true scaffold_5: 39641436-39645755 Setaria italica
Seita.5G355300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39641436-39641935 Setaria italica
Seita.5G355300 0.5kb downstream 0.5kb downstream 4320 true scaffold_5: 39641936-39646255 Setaria italica
Seita.5G355300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39645756-39646255 Setaria italica
Seita.5G355300 1.0kb upstream 1.0kb upstream 4820 true scaffold_5: 39640936-39645755 Setaria italica
Seita.5G355300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39640936-39641935 Setaria italica
Seita.5G355300 1.0kb downstream 1.0kb downstream 4820 true scaffold_5: 39641936-39646755 Setaria italica
Seita.5G355300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39645756-39646755 Setaria italica
Seita.5G355300 2.0kb upstream 2.0kb upstream 5820 true scaffold_5: 39639936-39645755 Setaria italica
Seita.5G355300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39639936-39641935 Setaria italica
Seita.5G355300 2.0kb downstream 2.0kb downstream 5820 true scaffold_5: 39641936-39647755 Setaria italica
Seita.5G355300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39645756-39647755 Setaria italica
Seita.5G355300 5.0kb upstream 5.0kb upstream 8820 true scaffold_5: 39636936-39645755 Setaria italica
Seita.5G355300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39636936-39641935 Setaria italica
Seita.5G355300 5.0kb downstream 5.0kb downstream 8820 true scaffold_5: 39641936-39650755 Setaria italica
Seita.5G355300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39645756-39650755 Setaria italica
Seita.5G355300 10.0kb upstream 10.0kb upstream 13820 true scaffold_5: 39631936-39645755 Setaria italica
Seita.5G355300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39631936-39641935 Setaria italica
Seita.5G355300 10.0kb downstream 10.0kb downstream 13820 true scaffold_5: 39641936-39655755 Setaria italica
Seita.5G355300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39645756-39655755 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183127 5267 Panicoideae View MSA
124574474 5269 Grass View MSA
122046839 5273 Angiosperm View MSA
123429079 5275 Viridiplantae View MSA
121350966 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.831        
cufflinks 11.348       High
cufflinks 1.278       Low
cufflinks 1.312       Low
cufflinks 1.248       Low
cufflinks 10.954       High
cufflinks 2.759        
cufflinks 1.873        
cufflinks 1.815        
cufflinks 3.393        
cufflinks 3.545        
cufflinks 1.62        
cufflinks 4.226        
cufflinks 1.398       Low
cufflinks 3.039        
cufflinks 3.221        
cufflinks 2.81        
cufflinks 2.609        
cufflinks 1.836        
cufflinks 2.378        

0 Strain