Gene : Seita.5G354300 S. italica v2.2
Defline:  (1 of 1) 1.1.99.2 - L-2-hydroxyglutarate dehydrogenase / L-alpha-hydroxyglutarate dehydrogenase Genomic Order:  3543
Name:  ? Seita.5G354300 Secondary Identifier:  ? PAC:32685788
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G354300 0.5kb upstream 0.5kb upstream 3999 true scaffold_5: 39595777-39599775 Setaria italica
Seita.5G354300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39595777-39596276 Setaria italica
Seita.5G354300 0.5kb downstream 0.5kb downstream 3999 true scaffold_5: 39596277-39600275 Setaria italica
Seita.5G354300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39599776-39600275 Setaria italica
Seita.5G354300 1.0kb upstream 1.0kb upstream 4499 true scaffold_5: 39595277-39599775 Setaria italica
Seita.5G354300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39595277-39596276 Setaria italica
Seita.5G354300 1.0kb downstream 1.0kb downstream 4499 true scaffold_5: 39596277-39600775 Setaria italica
Seita.5G354300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39599776-39600775 Setaria italica
Seita.5G354300 2.0kb upstream 2.0kb upstream 5499 true scaffold_5: 39594277-39599775 Setaria italica
Seita.5G354300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39594277-39596276 Setaria italica
Seita.5G354300 2.0kb downstream 2.0kb downstream 5499 true scaffold_5: 39596277-39601775 Setaria italica
Seita.5G354300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39599776-39601775 Setaria italica
Seita.5G354300 5.0kb upstream 5.0kb upstream 8499 true scaffold_5: 39591277-39599775 Setaria italica
Seita.5G354300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39591277-39596276 Setaria italica
Seita.5G354300 5.0kb downstream 5.0kb downstream 8499 true scaffold_5: 39596277-39604775 Setaria italica
Seita.5G354300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39599776-39604775 Setaria italica
Seita.5G354300 10.0kb upstream 10.0kb upstream 13499 true scaffold_5: 39586277-39599775 Setaria italica
Seita.5G354300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39586277-39596276 Setaria italica
Seita.5G354300 10.0kb downstream 10.0kb downstream 13499 true scaffold_5: 39596277-39609775 Setaria italica
Seita.5G354300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39599776-39609775 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188114 5267 Panicoideae View MSA
124570704 5269 Grass View MSA
122042852 5273 Angiosperm View MSA
121347258 5274 Embryophyte View MSA
123427019 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.291       High
cufflinks 0.52        
cufflinks 0.386        
cufflinks 0.455        
cufflinks 0.682        
cufflinks 0.457        
cufflinks 0.874        
cufflinks 0.474        
cufflinks 0.72        
cufflinks 1.025        
cufflinks 0.877        
cufflinks 0.304       Low
cufflinks 0.532        
cufflinks 0.402        
cufflinks 0.451        
cufflinks 2.304       High
cufflinks 0.359       Low
cufflinks 1.711       High
cufflinks 0.624        
cufflinks 0.346       Low

0 Strain