Gene : Seita.5G284900 S. italica v2.2
Defline:  (1 of 1) PTHR10791//PTHR10791:SF54 - RAG1-ACTIVATING PROTEIN 1 Genomic Order:  2849
Name:  ? Seita.5G284900 Secondary Identifier:  ? PAC:32682917
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G284900 0.5kb upstream 0.5kb upstream 2435 true scaffold_5: 34426332-34428766 Setaria italica
Seita.5G284900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 34426332-34426831 Setaria italica
Seita.5G284900 0.5kb downstream 0.5kb downstream 2435 true scaffold_5: 34426832-34429266 Setaria italica
Seita.5G284900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 34428767-34429266 Setaria italica
Seita.5G284900 1.0kb upstream 1.0kb upstream 2935 true scaffold_5: 34425832-34428766 Setaria italica
Seita.5G284900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 34425832-34426831 Setaria italica
Seita.5G284900 1.0kb downstream 1.0kb downstream 2935 true scaffold_5: 34426832-34429766 Setaria italica
Seita.5G284900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 34428767-34429766 Setaria italica
Seita.5G284900 2.0kb upstream 2.0kb upstream 3935 true scaffold_5: 34424832-34428766 Setaria italica
Seita.5G284900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 34424832-34426831 Setaria italica
Seita.5G284900 2.0kb downstream 2.0kb downstream 3935 true scaffold_5: 34426832-34430766 Setaria italica
Seita.5G284900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 34428767-34430766 Setaria italica
Seita.5G284900 5.0kb upstream 5.0kb upstream 6935 true scaffold_5: 34421832-34428766 Setaria italica
Seita.5G284900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 34421832-34426831 Setaria italica
Seita.5G284900 5.0kb downstream 5.0kb downstream 6935 true scaffold_5: 34426832-34433766 Setaria italica
Seita.5G284900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 34428767-34433766 Setaria italica
Seita.5G284900 10.0kb upstream 10.0kb upstream 11935 true scaffold_5: 34416832-34428766 Setaria italica
Seita.5G284900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 34416832-34426831 Setaria italica
Seita.5G284900 10.0kb downstream 10.0kb downstream 11935 true scaffold_5: 34426832-34438766 Setaria italica
Seita.5G284900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 34428767-34438766 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189878 5267 Panicoideae View MSA
124571013 5269 Grass View MSA
122048091 5273 Angiosperm View MSA
121310847 5274 Embryophyte View MSA
123348232 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.964       Low
cufflinks 27.5     High  
cufflinks 193.126     High High
cufflinks 249.032     High High
cufflinks 109.83     High  
cufflinks 24.448     High  
cufflinks 67.844     High  
cufflinks 88.801     High  
cufflinks 70.61     High  
cufflinks 5.604        
cufflinks 4.434        
cufflinks 3.206       Low
cufflinks 12.643        
cufflinks 147.92     High High
cufflinks 1.645       Low
cufflinks 67.63     High  
cufflinks 2.731       Low
cufflinks 31.268     High  
cufflinks 223.964     High High
cufflinks 1.597       Low

0 Strain