Gene : Seita.5G286700 S. italica v2.2
Defline:  (1 of 2) PF00928//PF01217 - Adaptor complexes medium subunit family (Adap_comp_sub) // Clathrin adaptor complex small chain (Clat_adaptor_s) Genomic Order:  2867
Name:  ? Seita.5G286700 Secondary Identifier:  ? PAC:32684582
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G286700 0.5kb upstream 0.5kb upstream 4598 true scaffold_5: 34558741-34563338 Setaria italica
Seita.5G286700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 34562839-34563338 Setaria italica
Seita.5G286700 0.5kb downstream 0.5kb downstream 4598 true scaffold_5: 34558241-34562838 Setaria italica
Seita.5G286700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 34558241-34558740 Setaria italica
Seita.5G286700 1.0kb upstream 1.0kb upstream 5098 true scaffold_5: 34558741-34563838 Setaria italica
Seita.5G286700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 34562839-34563838 Setaria italica
Seita.5G286700 1.0kb downstream 1.0kb downstream 5098 true scaffold_5: 34557741-34562838 Setaria italica
Seita.5G286700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 34557741-34558740 Setaria italica
Seita.5G286700 2.0kb upstream 2.0kb upstream 6098 true scaffold_5: 34558741-34564838 Setaria italica
Seita.5G286700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 34562839-34564838 Setaria italica
Seita.5G286700 2.0kb downstream 2.0kb downstream 6098 true scaffold_5: 34556741-34562838 Setaria italica
Seita.5G286700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 34556741-34558740 Setaria italica
Seita.5G286700 5.0kb upstream 5.0kb upstream 9098 true scaffold_5: 34558741-34567838 Setaria italica
Seita.5G286700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 34562839-34567838 Setaria italica
Seita.5G286700 5.0kb downstream 5.0kb downstream 9098 true scaffold_5: 34553741-34562838 Setaria italica
Seita.5G286700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 34553741-34558740 Setaria italica
Seita.5G286700 10.0kb upstream 10.0kb upstream 14098 true scaffold_5: 34558741-34572838 Setaria italica
Seita.5G286700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 34562839-34572838 Setaria italica
Seita.5G286700 10.0kb downstream 10.0kb downstream 14098 true scaffold_5: 34548741-34562838 Setaria italica
Seita.5G286700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 34548741-34558740 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181016 5267 Panicoideae View MSA
124573243 5269 Grass View MSA
122042321 5273 Angiosperm View MSA
121351396 5274 Embryophyte View MSA
123428377 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.748     High  
cufflinks 38.586     High  
cufflinks 25.436     High  
cufflinks 23.534     High Low
cufflinks 19.308     High Low
cufflinks 38.46     High  
cufflinks 27.501     High  
cufflinks 34.753     High  
cufflinks 23.883     High  
cufflinks 37.405     High  
cufflinks 40.236     High  
cufflinks 38.809     High  
cufflinks 37.395     High  
cufflinks 25.662     High  
cufflinks 45.155     High High
cufflinks 21.23     High Low
cufflinks 45.982     High High
cufflinks 23.436     High Low
cufflinks 25.33     High  
cufflinks 48.31     High High

0 Strain