Gene : Seita.5G288100 S. italica v2.2
Genomic Order:  2881 Name:  ? Seita.5G288100
Secondary Identifier:  ? PAC:32680645
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G288100 0.5kb upstream 0.5kb upstream 3584 true scaffold_5: 34638447-34642030 Setaria italica
Seita.5G288100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 34638447-34638946 Setaria italica
Seita.5G288100 0.5kb downstream 0.5kb downstream 3584 true scaffold_5: 34638947-34642530 Setaria italica
Seita.5G288100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 34642031-34642530 Setaria italica
Seita.5G288100 1.0kb upstream 1.0kb upstream 4084 true scaffold_5: 34637947-34642030 Setaria italica
Seita.5G288100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 34637947-34638946 Setaria italica
Seita.5G288100 1.0kb downstream 1.0kb downstream 4084 true scaffold_5: 34638947-34643030 Setaria italica
Seita.5G288100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 34642031-34643030 Setaria italica
Seita.5G288100 2.0kb upstream 2.0kb upstream 5084 true scaffold_5: 34636947-34642030 Setaria italica
Seita.5G288100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 34636947-34638946 Setaria italica
Seita.5G288100 2.0kb downstream 2.0kb downstream 5084 true scaffold_5: 34638947-34644030 Setaria italica
Seita.5G288100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 34642031-34644030 Setaria italica
Seita.5G288100 5.0kb upstream 5.0kb upstream 8084 true scaffold_5: 34633947-34642030 Setaria italica
Seita.5G288100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 34633947-34638946 Setaria italica
Seita.5G288100 5.0kb downstream 5.0kb downstream 8084 true scaffold_5: 34638947-34647030 Setaria italica
Seita.5G288100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 34642031-34647030 Setaria italica
Seita.5G288100 10.0kb upstream 10.0kb upstream 13084 true scaffold_5: 34628947-34642030 Setaria italica
Seita.5G288100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 34628947-34638946 Setaria italica
Seita.5G288100 10.0kb downstream 10.0kb downstream 13084 true scaffold_5: 34638947-34652030 Setaria italica
Seita.5G288100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 34642031-34652030 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192308 5267 Panicoideae View MSA
124579982 5269 Grass View MSA
122046096 5273 Angiosperm View MSA
121344412 5274 Embryophyte View MSA
123380039 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.065        
cufflinks 6.752        
cufflinks 3.422       Low
cufflinks 3.921       Low
cufflinks 4.492        
cufflinks 6.574        
cufflinks 6.651        
cufflinks 8.45       High
cufflinks 6.877        
cufflinks 10.489       High
cufflinks 6.638        
cufflinks 5.342        
cufflinks 7.908       High
cufflinks 3.693       Low
cufflinks 6.336        
cufflinks 4.885        
cufflinks 6.559        
cufflinks 2.834       Low
cufflinks 3.623       Low
cufflinks 6.399        

0 Strain