Gene : Seita.5G295100 S. italica v2.2
Defline:  (1 of 1) 3.2.1.141 - 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase / Maltooligosyl trehalose trehalohydrolase Genomic Order:  2951
Name:  ? Seita.5G295100 Secondary Identifier:  ? PAC:32684892
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G295100 0.5kb upstream 0.5kb upstream 10940 true scaffold_5: 35129309-35140248 Setaria italica
Seita.5G295100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35129309-35129808 Setaria italica
Seita.5G295100 0.5kb downstream 0.5kb downstream 10940 true scaffold_5: 35129809-35140748 Setaria italica
Seita.5G295100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35140249-35140748 Setaria italica
Seita.5G295100 1.0kb upstream 1.0kb upstream 11440 true scaffold_5: 35128809-35140248 Setaria italica
Seita.5G295100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35128809-35129808 Setaria italica
Seita.5G295100 1.0kb downstream 1.0kb downstream 11440 true scaffold_5: 35129809-35141248 Setaria italica
Seita.5G295100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35140249-35141248 Setaria italica
Seita.5G295100 2.0kb upstream 2.0kb upstream 12440 true scaffold_5: 35127809-35140248 Setaria italica
Seita.5G295100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35127809-35129808 Setaria italica
Seita.5G295100 2.0kb downstream 2.0kb downstream 12440 true scaffold_5: 35129809-35142248 Setaria italica
Seita.5G295100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35140249-35142248 Setaria italica
Seita.5G295100 5.0kb upstream 5.0kb upstream 15440 true scaffold_5: 35124809-35140248 Setaria italica
Seita.5G295100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35124809-35129808 Setaria italica
Seita.5G295100 5.0kb downstream 5.0kb downstream 15440 true scaffold_5: 35129809-35145248 Setaria italica
Seita.5G295100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35140249-35145248 Setaria italica
Seita.5G295100 10.0kb upstream 10.0kb upstream 20440 true scaffold_5: 35119809-35140248 Setaria italica
Seita.5G295100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35119809-35129808 Setaria italica
Seita.5G295100 10.0kb downstream 10.0kb downstream 20440 true scaffold_5: 35129809-35150248 Setaria italica
Seita.5G295100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35140249-35150248 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041096 5273 Angiosperm View MSA
122176477 5267 Panicoideae View MSA
124582199 5269 Grass View MSA
121348688 5274 Embryophyte View MSA
123427521 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.169       Low
cufflinks 6.874        
cufflinks 58.671     High High
cufflinks 46.093     High High
cufflinks 17.563     High  
cufflinks 7.138        
cufflinks 15.318     High  
cufflinks 7.735        
cufflinks 7.72        
cufflinks 2.83       Low
cufflinks 5.342        
cufflinks 7.386        
cufflinks 6.23        
cufflinks 41.601     High High
cufflinks 5.337        
cufflinks 11.912        
cufflinks 6.451        
cufflinks 12.74     High  
cufflinks 29.376     High High
cufflinks 4.888        

0 Strain