Gene : Seita.5G295200 S. italica v2.2
Defline:  (1 of 1) PTHR11743//PTHR11743:SF30 - VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL Genomic Order:  2952
Name:  ? Seita.5G295200 Secondary Identifier:  ? PAC:32686067
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G295200 0.5kb upstream 0.5kb upstream 3497 true scaffold_5: 35140434-35143930 Setaria italica
Seita.5G295200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35143431-35143930 Setaria italica
Seita.5G295200 0.5kb downstream 0.5kb downstream 3497 true scaffold_5: 35139934-35143430 Setaria italica
Seita.5G295200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35139934-35140433 Setaria italica
Seita.5G295200 1.0kb upstream 1.0kb upstream 3997 true scaffold_5: 35140434-35144430 Setaria italica
Seita.5G295200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35143431-35144430 Setaria italica
Seita.5G295200 1.0kb downstream 1.0kb downstream 3997 true scaffold_5: 35139434-35143430 Setaria italica
Seita.5G295200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35139434-35140433 Setaria italica
Seita.5G295200 2.0kb upstream 2.0kb upstream 4997 true scaffold_5: 35140434-35145430 Setaria italica
Seita.5G295200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35143431-35145430 Setaria italica
Seita.5G295200 2.0kb downstream 2.0kb downstream 4997 true scaffold_5: 35138434-35143430 Setaria italica
Seita.5G295200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35138434-35140433 Setaria italica
Seita.5G295200 5.0kb upstream 5.0kb upstream 7997 true scaffold_5: 35140434-35148430 Setaria italica
Seita.5G295200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35143431-35148430 Setaria italica
Seita.5G295200 5.0kb downstream 5.0kb downstream 7997 true scaffold_5: 35135434-35143430 Setaria italica
Seita.5G295200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35135434-35140433 Setaria italica
Seita.5G295200 10.0kb upstream 10.0kb upstream 12997 true scaffold_5: 35140434-35153430 Setaria italica
Seita.5G295200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35143431-35153430 Setaria italica
Seita.5G295200 10.0kb downstream 10.0kb downstream 12997 true scaffold_5: 35130434-35143430 Setaria italica
Seita.5G295200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35130434-35140433 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180753 5267 Panicoideae View MSA
124577529 5269 Grass View MSA
122042398 5273 Angiosperm View MSA
121349603 5274 Embryophyte View MSA
123426124 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.879        
cufflinks 26.605     High High
cufflinks 2.466       Low
cufflinks 1.06       Low
cufflinks 2.764       Low
cufflinks 26.906     High High
cufflinks 8.372        
cufflinks 16.55     High  
cufflinks 11.53        
cufflinks 14.37        
cufflinks 11.185        
cufflinks 12.311        
cufflinks 10.267        
cufflinks 5.921        
cufflinks 20.161     High  
cufflinks 4.125        
cufflinks 18.514     High  
cufflinks 29.203     High High
cufflinks 1.783       Low
cufflinks 20.417     High  

0 Strain