Gene : Seita.5G301100 S. italica v2.2
Defline:  (1 of 1) 2.3.1.129 - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase / UDP-N-acetylglucosamine acyltransferase Genomic Order:  3011
Name:  ? Seita.5G301100 Secondary Identifier:  ? PAC:32682881
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica NAGLIPASYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G301100 0.5kb upstream 0.5kb upstream 4748 true scaffold_5: 35524995-35529742 Setaria italica
Seita.5G301100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35524995-35525494 Setaria italica
Seita.5G301100 0.5kb downstream 0.5kb downstream 4748 true scaffold_5: 35525495-35530242 Setaria italica
Seita.5G301100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35529743-35530242 Setaria italica
Seita.5G301100 1.0kb upstream 1.0kb upstream 5248 true scaffold_5: 35524495-35529742 Setaria italica
Seita.5G301100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35524495-35525494 Setaria italica
Seita.5G301100 1.0kb downstream 1.0kb downstream 5248 true scaffold_5: 35525495-35530742 Setaria italica
Seita.5G301100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35529743-35530742 Setaria italica
Seita.5G301100 2.0kb upstream 2.0kb upstream 6248 true scaffold_5: 35523495-35529742 Setaria italica
Seita.5G301100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35523495-35525494 Setaria italica
Seita.5G301100 2.0kb downstream 2.0kb downstream 6248 true scaffold_5: 35525495-35531742 Setaria italica
Seita.5G301100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35529743-35531742 Setaria italica
Seita.5G301100 5.0kb upstream 5.0kb upstream 9248 true scaffold_5: 35520495-35529742 Setaria italica
Seita.5G301100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35520495-35525494 Setaria italica
Seita.5G301100 5.0kb downstream 5.0kb downstream 9248 true scaffold_5: 35525495-35534742 Setaria italica
Seita.5G301100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35529743-35534742 Setaria italica
Seita.5G301100 10.0kb upstream 10.0kb upstream 14248 true scaffold_5: 35515495-35529742 Setaria italica
Seita.5G301100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35515495-35525494 Setaria italica
Seita.5G301100 10.0kb downstream 10.0kb downstream 14248 true scaffold_5: 35525495-35539742 Setaria italica
Seita.5G301100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35529743-35539742 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041125 5273 Angiosperm View MSA
122185557 5267 Panicoideae View MSA
124582641 5269 Grass View MSA
121347426 5274 Embryophyte View MSA
123380545 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.325        
cufflinks 1.577        
cufflinks 2.089        
cufflinks 2.028        
cufflinks 1.154       Low
cufflinks 1.946        
cufflinks 1.41       Low
cufflinks 1.927        
cufflinks 1.22       Low
cufflinks 1.837        
cufflinks 1.507        
cufflinks 2.53        
cufflinks 1.866        
cufflinks 2.461        
cufflinks 1.753        
cufflinks 2.387        
cufflinks 2.443        
cufflinks 4.35       High
cufflinks 2.323        
cufflinks 2.182        

0 Strain