Gene : Seita.5G301000 S. italica v2.2
Defline:  (1 of 2) PTHR12299//PTHR12299:SF27 - HYALURONIC ACID-BINDING PROTEIN 4 Genomic Order:  3010
Name:  ? Seita.5G301000 Secondary Identifier:  ? PAC:32680842
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G301000 0.5kb upstream 0.5kb upstream 3856 true scaffold_5: 35520157-35524012 Setaria italica
Seita.5G301000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35523513-35524012 Setaria italica
Seita.5G301000 0.5kb downstream 0.5kb downstream 3856 true scaffold_5: 35519657-35523512 Setaria italica
Seita.5G301000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35519657-35520156 Setaria italica
Seita.5G301000 1.0kb upstream 1.0kb upstream 4356 true scaffold_5: 35520157-35524512 Setaria italica
Seita.5G301000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35523513-35524512 Setaria italica
Seita.5G301000 1.0kb downstream 1.0kb downstream 4356 true scaffold_5: 35519157-35523512 Setaria italica
Seita.5G301000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35519157-35520156 Setaria italica
Seita.5G301000 2.0kb upstream 2.0kb upstream 5356 true scaffold_5: 35520157-35525512 Setaria italica
Seita.5G301000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35523513-35525512 Setaria italica
Seita.5G301000 2.0kb downstream 2.0kb downstream 5356 true scaffold_5: 35518157-35523512 Setaria italica
Seita.5G301000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35518157-35520156 Setaria italica
Seita.5G301000 5.0kb upstream 5.0kb upstream 8356 true scaffold_5: 35520157-35528512 Setaria italica
Seita.5G301000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35523513-35528512 Setaria italica
Seita.5G301000 5.0kb downstream 5.0kb downstream 8356 true scaffold_5: 35515157-35523512 Setaria italica
Seita.5G301000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35515157-35520156 Setaria italica
Seita.5G301000 10.0kb upstream 10.0kb upstream 13356 true scaffold_5: 35520157-35533512 Setaria italica
Seita.5G301000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35523513-35533512 Setaria italica
Seita.5G301000 10.0kb downstream 10.0kb downstream 13356 true scaffold_5: 35510157-35523512 Setaria italica
Seita.5G301000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35510157-35520156 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182482 5267 Panicoideae View MSA
124577590 5269 Grass View MSA
122042476 5273 Angiosperm View MSA
121348767 5274 Embryophyte View MSA
123425134 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.95     High  
cufflinks 63.029     High  
cufflinks 29.365     High  
cufflinks 22.581     High Low
cufflinks 33.594     High  
cufflinks 73.279     High  
cufflinks 56.297     High  
cufflinks 119.485     High High
cufflinks 114.398     High High
cufflinks 46.743     High  
cufflinks 65.576     High  
cufflinks 73.532     High  
cufflinks 31.546     High  
cufflinks 38.217     High  
cufflinks 86.904     High  
cufflinks 25.346     High Low
cufflinks 107.678     High High
cufflinks 24.218     High Low
cufflinks 26.29     High Low
cufflinks 108.553     High High

0 Strain