Gene : Seita.5G301600 S. italica v2.2
Defline:  (1 of 1) PTHR21068:SF5 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MIL23-RELATED Genomic Order:  3016
Name:  ? Seita.5G301600 Secondary Identifier:  ? PAC:32686434
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G301600 0.5kb upstream 0.5kb upstream 2372 true scaffold_5: 35577403-35579774 Setaria italica
Seita.5G301600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35577403-35577902 Setaria italica
Seita.5G301600 0.5kb downstream 0.5kb downstream 2372 true scaffold_5: 35577903-35580274 Setaria italica
Seita.5G301600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35579775-35580274 Setaria italica
Seita.5G301600 1.0kb upstream 1.0kb upstream 2872 true scaffold_5: 35576903-35579774 Setaria italica
Seita.5G301600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35576903-35577902 Setaria italica
Seita.5G301600 1.0kb downstream 1.0kb downstream 2872 true scaffold_5: 35577903-35580774 Setaria italica
Seita.5G301600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35579775-35580774 Setaria italica
Seita.5G301600 2.0kb upstream 2.0kb upstream 3872 true scaffold_5: 35575903-35579774 Setaria italica
Seita.5G301600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35575903-35577902 Setaria italica
Seita.5G301600 2.0kb downstream 2.0kb downstream 3872 true scaffold_5: 35577903-35581774 Setaria italica
Seita.5G301600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35579775-35581774 Setaria italica
Seita.5G301600 5.0kb upstream 5.0kb upstream 6872 true scaffold_5: 35572903-35579774 Setaria italica
Seita.5G301600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35572903-35577902 Setaria italica
Seita.5G301600 5.0kb downstream 5.0kb downstream 6872 true scaffold_5: 35577903-35584774 Setaria italica
Seita.5G301600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35579775-35584774 Setaria italica
Seita.5G301600 10.0kb upstream 10.0kb upstream 11872 true scaffold_5: 35567903-35579774 Setaria italica
Seita.5G301600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35567903-35577902 Setaria italica
Seita.5G301600 10.0kb downstream 10.0kb downstream 11872 true scaffold_5: 35577903-35589774 Setaria italica
Seita.5G301600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35579775-35589774 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026413 5273 Angiosperm View MSA
122180102 5267 Panicoideae View MSA
124581054 5269 Grass View MSA
121296318 5274 Embryophyte View MSA
123334500 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.588        
cufflinks 1.225       Low
cufflinks 5.449        
cufflinks 8.842       High
cufflinks 4.497        
cufflinks 2.483        
cufflinks 3.137        
cufflinks 8.24       High
cufflinks 2.826        
cufflinks 13.849       High
cufflinks 3.157        
cufflinks 2.292        
cufflinks 3.059        
cufflinks 11.547       High
cufflinks 1.359       Low
cufflinks 4.498        
cufflinks 2.096        
cufflinks 4.082        
cufflinks 5.751        
cufflinks 2.002        

0 Strain