Gene : Seita.5G299300 S. italica v2.2
Defline:  (1 of 1) PF15870 - ElonginA binding-protein 1 (EloA-BP1) Genomic Order:  2993
Name:  ? Seita.5G299300 Secondary Identifier:  ? PAC:32683952
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G299300 0.5kb upstream 0.5kb upstream 8653 true scaffold_5: 35441247-35449899 Setaria italica
Seita.5G299300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35441247-35441746 Setaria italica
Seita.5G299300 0.5kb downstream 0.5kb downstream 8653 true scaffold_5: 35441747-35450399 Setaria italica
Seita.5G299300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35449900-35450399 Setaria italica
Seita.5G299300 1.0kb upstream 1.0kb upstream 9153 true scaffold_5: 35440747-35449899 Setaria italica
Seita.5G299300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35440747-35441746 Setaria italica
Seita.5G299300 1.0kb downstream 1.0kb downstream 9153 true scaffold_5: 35441747-35450899 Setaria italica
Seita.5G299300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35449900-35450899 Setaria italica
Seita.5G299300 2.0kb upstream 2.0kb upstream 10153 true scaffold_5: 35439747-35449899 Setaria italica
Seita.5G299300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35439747-35441746 Setaria italica
Seita.5G299300 2.0kb downstream 2.0kb downstream 10153 true scaffold_5: 35441747-35451899 Setaria italica
Seita.5G299300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35449900-35451899 Setaria italica
Seita.5G299300 5.0kb upstream 5.0kb upstream 13153 true scaffold_5: 35436747-35449899 Setaria italica
Seita.5G299300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35436747-35441746 Setaria italica
Seita.5G299300 5.0kb downstream 5.0kb downstream 13153 true scaffold_5: 35441747-35454899 Setaria italica
Seita.5G299300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35449900-35454899 Setaria italica
Seita.5G299300 10.0kb upstream 10.0kb upstream 18153 true scaffold_5: 35431747-35449899 Setaria italica
Seita.5G299300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35431747-35441746 Setaria italica
Seita.5G299300 10.0kb downstream 10.0kb downstream 18153 true scaffold_5: 35441747-35459899 Setaria italica
Seita.5G299300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35449900-35459899 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184489 5267 Panicoideae View MSA
124569011 5269 Grass View MSA
122043530 5273 Angiosperm View MSA
121343947 5274 Embryophyte View MSA
123379945 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.599        
cufflinks 4.224       High
cufflinks 3.303        
cufflinks 2.89        
cufflinks 2.534        
cufflinks 3.953       High
cufflinks 3.297        
cufflinks 2.519        
cufflinks 2.386        
cufflinks 1.245       Low
cufflinks 3.213        
cufflinks 2.998        
cufflinks 2.774        
cufflinks 2.707        
cufflinks 3.342        
cufflinks 4.091       High
cufflinks 2.282        
cufflinks 3.165        
cufflinks 2.418        
cufflinks 2.366        

0 Strain