Gene : Seita.5G302000 S. italica v2.2
Defline:  (1 of 1) PTHR10210:SF45 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 3, CHLOROPLASTIC Genomic Order:  3020
Name:  ? Seita.5G302000 Secondary Identifier:  ? PAC:32685284
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-662 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G302000 0.5kb upstream 0.5kb upstream 4053 true scaffold_5: 35596686-35600738 Setaria italica
Seita.5G302000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35596686-35597185 Setaria italica
Seita.5G302000 0.5kb downstream 0.5kb downstream 4053 true scaffold_5: 35597186-35601238 Setaria italica
Seita.5G302000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35600739-35601238 Setaria italica
Seita.5G302000 1.0kb upstream 1.0kb upstream 4553 true scaffold_5: 35596186-35600738 Setaria italica
Seita.5G302000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35596186-35597185 Setaria italica
Seita.5G302000 1.0kb downstream 1.0kb downstream 4553 true scaffold_5: 35597186-35601738 Setaria italica
Seita.5G302000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35600739-35601738 Setaria italica
Seita.5G302000 2.0kb upstream 2.0kb upstream 5553 true scaffold_5: 35595186-35600738 Setaria italica
Seita.5G302000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35595186-35597185 Setaria italica
Seita.5G302000 2.0kb downstream 2.0kb downstream 5553 true scaffold_5: 35597186-35602738 Setaria italica
Seita.5G302000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35600739-35602738 Setaria italica
Seita.5G302000 5.0kb upstream 5.0kb upstream 8553 true scaffold_5: 35592186-35600738 Setaria italica
Seita.5G302000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35592186-35597185 Setaria italica
Seita.5G302000 5.0kb downstream 5.0kb downstream 8553 true scaffold_5: 35597186-35605738 Setaria italica
Seita.5G302000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35600739-35605738 Setaria italica
Seita.5G302000 10.0kb upstream 10.0kb upstream 13553 true scaffold_5: 35587186-35600738 Setaria italica
Seita.5G302000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35587186-35597185 Setaria italica
Seita.5G302000 10.0kb downstream 10.0kb downstream 13553 true scaffold_5: 35597186-35610738 Setaria italica
Seita.5G302000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35600739-35610738 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185893 5267 Panicoideae View MSA
124584463 5269 Grass View MSA
122048410 5273 Angiosperm View MSA
121347977 5274 Embryophyte View MSA
123424356 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.013        
cufflinks 9.178        
cufflinks 2.859       Low
cufflinks 2.961       Low
cufflinks 4.235       Low
cufflinks 8.48        
cufflinks 11.827        
cufflinks 10.375        
cufflinks 17.502     High High
cufflinks 12.268        
cufflinks 12.973        
cufflinks 10.961        
cufflinks 15.171     High High
cufflinks 6.516        
cufflinks 9.43        
cufflinks 7.347        
cufflinks 12.81        
cufflinks 4.456       Low
cufflinks 5.547        
cufflinks 14.888     High High

0 Strain