Gene : Seita.5G302200 S. italica v2.2
Defline:  (1 of 55) 3.6.3.44 - Xenobiotic-transporting ATPase / Steroid-transporting ATPase Genomic Order:  3022
Name:  ? Seita.5G302200 Secondary Identifier:  ? PAC:32681543
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G302200 0.5kb upstream 0.5kb upstream 8245 true scaffold_5: 35604607-35612851 Setaria italica
Seita.5G302200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35612352-35612851 Setaria italica
Seita.5G302200 0.5kb downstream 0.5kb downstream 8245 true scaffold_5: 35604107-35612351 Setaria italica
Seita.5G302200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35604107-35604606 Setaria italica
Seita.5G302200 1.0kb upstream 1.0kb upstream 8745 true scaffold_5: 35604607-35613351 Setaria italica
Seita.5G302200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35612352-35613351 Setaria italica
Seita.5G302200 1.0kb downstream 1.0kb downstream 8745 true scaffold_5: 35603607-35612351 Setaria italica
Seita.5G302200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35603607-35604606 Setaria italica
Seita.5G302200 2.0kb upstream 2.0kb upstream 9745 true scaffold_5: 35604607-35614351 Setaria italica
Seita.5G302200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35612352-35614351 Setaria italica
Seita.5G302200 2.0kb downstream 2.0kb downstream 9745 true scaffold_5: 35602607-35612351 Setaria italica
Seita.5G302200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35602607-35604606 Setaria italica
Seita.5G302200 5.0kb upstream 5.0kb upstream 12745 true scaffold_5: 35604607-35617351 Setaria italica
Seita.5G302200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35612352-35617351 Setaria italica
Seita.5G302200 5.0kb downstream 5.0kb downstream 12745 true scaffold_5: 35599607-35612351 Setaria italica
Seita.5G302200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35599607-35604606 Setaria italica
Seita.5G302200 10.0kb upstream 10.0kb upstream 17745 true scaffold_5: 35604607-35622351 Setaria italica
Seita.5G302200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35612352-35622351 Setaria italica
Seita.5G302200 10.0kb downstream 10.0kb downstream 17745 true scaffold_5: 35594607-35612351 Setaria italica
Seita.5G302200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35594607-35604606 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184542 5267 Panicoideae View MSA
124576830 5269 Grass View MSA
122043754 5273 Angiosperm View MSA
121310182 5274 Embryophyte View MSA
123347744 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.861        
cufflinks 8.348        
cufflinks 1.296        
cufflinks 0.208       Low
cufflinks 0.996        
cufflinks 14.622     High High
cufflinks 4.641        
cufflinks 4.238        
cufflinks 9.977        
cufflinks 2.874        
cufflinks 7.597        
cufflinks 4.354        
cufflinks 5.67        
cufflinks 4.963        
cufflinks 25.872     High High
cufflinks 0.137       Low
cufflinks 8.634        
cufflinks 0.099       Low
cufflinks 0.537       Low
cufflinks 7.793        

0 Strain