Gene : Seita.5G306000 S. italica v2.2
Defline:  (1 of 2) PTHR31282:SF9 - WRKY TRANSCRIPTION FACTOR 65-RELATED Genomic Order:  3060
Name:  ? Seita.5G306000 Secondary Identifier:  ? PAC:32680915
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G306000 0.5kb upstream 0.5kb upstream 3109 true scaffold_5: 35945460-35948568 Setaria italica
Seita.5G306000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35948069-35948568 Setaria italica
Seita.5G306000 0.5kb downstream 0.5kb downstream 3109 true scaffold_5: 35944960-35948068 Setaria italica
Seita.5G306000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35944960-35945459 Setaria italica
Seita.5G306000 1.0kb upstream 1.0kb upstream 3609 true scaffold_5: 35945460-35949068 Setaria italica
Seita.5G306000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35948069-35949068 Setaria italica
Seita.5G306000 1.0kb downstream 1.0kb downstream 3609 true scaffold_5: 35944460-35948068 Setaria italica
Seita.5G306000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35944460-35945459 Setaria italica
Seita.5G306000 2.0kb upstream 2.0kb upstream 4609 true scaffold_5: 35945460-35950068 Setaria italica
Seita.5G306000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35948069-35950068 Setaria italica
Seita.5G306000 2.0kb downstream 2.0kb downstream 4609 true scaffold_5: 35943460-35948068 Setaria italica
Seita.5G306000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35943460-35945459 Setaria italica
Seita.5G306000 5.0kb upstream 5.0kb upstream 7609 true scaffold_5: 35945460-35953068 Setaria italica
Seita.5G306000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35948069-35953068 Setaria italica
Seita.5G306000 5.0kb downstream 5.0kb downstream 7609 true scaffold_5: 35940460-35948068 Setaria italica
Seita.5G306000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35940460-35945459 Setaria italica
Seita.5G306000 10.0kb upstream 10.0kb upstream 12609 true scaffold_5: 35945460-35958068 Setaria italica
Seita.5G306000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35948069-35958068 Setaria italica
Seita.5G306000 10.0kb downstream 10.0kb downstream 12609 true scaffold_5: 35935460-35948068 Setaria italica
Seita.5G306000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35935460-35945459 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180019 5267 Panicoideae View MSA
124573349 5269 Grass View MSA
122048778 5273 Angiosperm View MSA
121311107 5274 Embryophyte View MSA
123348451 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.681        
cufflinks 0.204       Low
cufflinks 3.109        
cufflinks 4.131        
cufflinks 1.68        
cufflinks 0.301       Low
cufflinks 0.555        
cufflinks 1.379        
cufflinks 0.258       Low
cufflinks 3.473        
cufflinks 0.795        
cufflinks 3.329        
cufflinks 2.885        
cufflinks 9.779       High
cufflinks 2.612        
cufflinks 1.001        
cufflinks 3.831        
cufflinks 0.434       Low
cufflinks 1.897        
cufflinks 3.987        

0 Strain