Gene : Seita.5G306200 S. italica v2.2
Defline:  (1 of 3) PTHR11266:SF37 - EXPRESSED PROTEIN Genomic Order:  3062
Name:  ? Seita.5G306200 Secondary Identifier:  ? PAC:32683482
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G306200 0.5kb upstream 0.5kb upstream 3034 true scaffold_5: 35955476-35958509 Setaria italica
Seita.5G306200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35955476-35955975 Setaria italica
Seita.5G306200 0.5kb downstream 0.5kb downstream 3034 true scaffold_5: 35955976-35959009 Setaria italica
Seita.5G306200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35958510-35959009 Setaria italica
Seita.5G306200 1.0kb upstream 1.0kb upstream 3534 true scaffold_5: 35954976-35958509 Setaria italica
Seita.5G306200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35954976-35955975 Setaria italica
Seita.5G306200 1.0kb downstream 1.0kb downstream 3534 true scaffold_5: 35955976-35959509 Setaria italica
Seita.5G306200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35958510-35959509 Setaria italica
Seita.5G306200 2.0kb upstream 2.0kb upstream 4534 true scaffold_5: 35953976-35958509 Setaria italica
Seita.5G306200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35953976-35955975 Setaria italica
Seita.5G306200 2.0kb downstream 2.0kb downstream 4534 true scaffold_5: 35955976-35960509 Setaria italica
Seita.5G306200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35958510-35960509 Setaria italica
Seita.5G306200 5.0kb upstream 5.0kb upstream 7534 true scaffold_5: 35950976-35958509 Setaria italica
Seita.5G306200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35950976-35955975 Setaria italica
Seita.5G306200 5.0kb downstream 5.0kb downstream 7534 true scaffold_5: 35955976-35963509 Setaria italica
Seita.5G306200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35958510-35963509 Setaria italica
Seita.5G306200 10.0kb upstream 10.0kb upstream 12534 true scaffold_5: 35945976-35958509 Setaria italica
Seita.5G306200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35945976-35955975 Setaria italica
Seita.5G306200 10.0kb downstream 10.0kb downstream 12534 true scaffold_5: 35955976-35968509 Setaria italica
Seita.5G306200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35958510-35968509 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041168 5273 Angiosperm View MSA
122194787 5267 Panicoideae View MSA
124569579 5269 Grass View MSA
121344957 5274 Embryophyte View MSA
123428334 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.12       Low
cufflinks 3.872        
cufflinks 6.889        
cufflinks 7.927        
cufflinks 10.517       High
cufflinks 4.019        
cufflinks 5.461        
cufflinks 11.791       High
cufflinks 10.874       High
cufflinks 4.517        
cufflinks 3.05       Low
cufflinks 4.126        
cufflinks 2.41       Low
cufflinks 8.298       High
cufflinks 3.3       Low
cufflinks 4.951        
cufflinks 4.98        
cufflinks 5.658        
cufflinks 4.565        
cufflinks 4.76        

0 Strain