Gene : Seita.5G311000 S. italica v2.2
Defline:  (1 of 1) PTHR13697//PTHR13697:SF34 - PHOSPHOFRUCTOKINASE Genomic Order:  3110
Name:  ? Seita.5G311000 Secondary Identifier:  ? PAC:32683639
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ANAEROFRUCAT-PWY Setaria italica pathologic  
Sitalica ANAGLYCOLYSIS-PWY Setaria italica pathologic  
Sitalica PWY-1042 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G311000 0.5kb upstream 0.5kb upstream 5600 true scaffold_5: 36279301-36284900 Setaria italica
Seita.5G311000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36284401-36284900 Setaria italica
Seita.5G311000 0.5kb downstream 0.5kb downstream 5600 true scaffold_5: 36278801-36284400 Setaria italica
Seita.5G311000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36278801-36279300 Setaria italica
Seita.5G311000 1.0kb upstream 1.0kb upstream 6100 true scaffold_5: 36279301-36285400 Setaria italica
Seita.5G311000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36284401-36285400 Setaria italica
Seita.5G311000 1.0kb downstream 1.0kb downstream 6100 true scaffold_5: 36278301-36284400 Setaria italica
Seita.5G311000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36278301-36279300 Setaria italica
Seita.5G311000 2.0kb upstream 2.0kb upstream 7100 true scaffold_5: 36279301-36286400 Setaria italica
Seita.5G311000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36284401-36286400 Setaria italica
Seita.5G311000 2.0kb downstream 2.0kb downstream 7100 true scaffold_5: 36277301-36284400 Setaria italica
Seita.5G311000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36277301-36279300 Setaria italica
Seita.5G311000 5.0kb upstream 5.0kb upstream 10100 true scaffold_5: 36279301-36289400 Setaria italica
Seita.5G311000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36284401-36289400 Setaria italica
Seita.5G311000 5.0kb downstream 5.0kb downstream 10100 true scaffold_5: 36274301-36284400 Setaria italica
Seita.5G311000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36274301-36279300 Setaria italica
Seita.5G311000 10.0kb upstream 10.0kb upstream 15100 true scaffold_5: 36279301-36294400 Setaria italica
Seita.5G311000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36284401-36294400 Setaria italica
Seita.5G311000 10.0kb downstream 10.0kb downstream 15100 true scaffold_5: 36269301-36284400 Setaria italica
Seita.5G311000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36269301-36279300 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176673 5267 Panicoideae View MSA
124588642 5269 Grass View MSA
122042097 5273 Angiosperm View MSA
121349898 5274 Embryophyte View MSA
123428795 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.56     High  
cufflinks 12.154        
cufflinks 3.713       Low
cufflinks 3.191       Low
cufflinks 3.666       Low
cufflinks 13.225        
cufflinks 7.662        
cufflinks 9.449        
cufflinks 5.659        
cufflinks 11.529        
cufflinks 14.374     High  
cufflinks 17.645     High  
cufflinks 16.34     High  
cufflinks 5.328        
cufflinks 20.095     High High
cufflinks 8.694        
cufflinks 23.929     High High
cufflinks 7.675        
cufflinks 4.063       Low
cufflinks 18.661     High High

0 Strain