Gene : Seita.5G310000 S. italica v2.2
Defline:  (1 of 1) 3.1.3.32 - Polynucleotide 3'-phosphatase / 2'(3')-polynucleotidase Genomic Order:  3100
Name:  ? Seita.5G310000 Secondary Identifier:  ? PAC:32680631
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G310000 0.5kb upstream 0.5kb upstream 10532 true scaffold_5: 36212476-36223007 Setaria italica
Seita.5G310000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36212476-36212975 Setaria italica
Seita.5G310000 0.5kb downstream 0.5kb downstream 10532 true scaffold_5: 36212976-36223507 Setaria italica
Seita.5G310000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36223008-36223507 Setaria italica
Seita.5G310000 1.0kb upstream 1.0kb upstream 11032 true scaffold_5: 36211976-36223007 Setaria italica
Seita.5G310000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36211976-36212975 Setaria italica
Seita.5G310000 1.0kb downstream 1.0kb downstream 11032 true scaffold_5: 36212976-36224007 Setaria italica
Seita.5G310000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36223008-36224007 Setaria italica
Seita.5G310000 2.0kb upstream 2.0kb upstream 12032 true scaffold_5: 36210976-36223007 Setaria italica
Seita.5G310000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36210976-36212975 Setaria italica
Seita.5G310000 2.0kb downstream 2.0kb downstream 12032 true scaffold_5: 36212976-36225007 Setaria italica
Seita.5G310000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36223008-36225007 Setaria italica
Seita.5G310000 5.0kb upstream 5.0kb upstream 15032 true scaffold_5: 36207976-36223007 Setaria italica
Seita.5G310000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36207976-36212975 Setaria italica
Seita.5G310000 5.0kb downstream 5.0kb downstream 15032 true scaffold_5: 36212976-36228007 Setaria italica
Seita.5G310000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36223008-36228007 Setaria italica
Seita.5G310000 10.0kb upstream 10.0kb upstream 20032 true scaffold_5: 36202976-36223007 Setaria italica
Seita.5G310000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36202976-36212975 Setaria italica
Seita.5G310000 10.0kb downstream 10.0kb downstream 20032 true scaffold_5: 36212976-36233007 Setaria italica
Seita.5G310000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36223008-36233007 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187723 5267 Panicoideae View MSA
124588468 5269 Grass View MSA
122048417 5273 Angiosperm View MSA
121348485 5274 Embryophyte View MSA
123426265 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.629        
cufflinks 3.026       High
cufflinks 1.263        
cufflinks 0.837       Low
cufflinks 1.079       Low
cufflinks 2.464       High
cufflinks 2.297        
cufflinks 1.763        
cufflinks 1.717        
cufflinks 1.242        
cufflinks 1.742        
cufflinks 1.757        
cufflinks 0.978       Low
cufflinks 1.99        
cufflinks 1.765        
cufflinks 2.785       High
cufflinks 1.6        
cufflinks 3.073       High
cufflinks 0.936       Low
cufflinks 1.779        

0 Strain