Gene : Seita.5G311900 S. italica v2.2
Defline:  (1 of 4) 3.4.22.1 - Cathepsin B / Cathepsin B1 Genomic Order:  3119
Name:  ? Seita.5G311900 Secondary Identifier:  ? PAC:32681626
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G311900 0.5kb upstream 0.5kb upstream 4079 true scaffold_5: 36336495-36340573 Setaria italica
Seita.5G311900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36336495-36336994 Setaria italica
Seita.5G311900 0.5kb downstream 0.5kb downstream 4079 true scaffold_5: 36336995-36341073 Setaria italica
Seita.5G311900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36340574-36341073 Setaria italica
Seita.5G311900 1.0kb upstream 1.0kb upstream 4579 true scaffold_5: 36335995-36340573 Setaria italica
Seita.5G311900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36335995-36336994 Setaria italica
Seita.5G311900 1.0kb downstream 1.0kb downstream 4579 true scaffold_5: 36336995-36341573 Setaria italica
Seita.5G311900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36340574-36341573 Setaria italica
Seita.5G311900 2.0kb upstream 2.0kb upstream 5579 true scaffold_5: 36334995-36340573 Setaria italica
Seita.5G311900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36334995-36336994 Setaria italica
Seita.5G311900 2.0kb downstream 2.0kb downstream 5579 true scaffold_5: 36336995-36342573 Setaria italica
Seita.5G311900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36340574-36342573 Setaria italica
Seita.5G311900 5.0kb upstream 5.0kb upstream 8579 true scaffold_5: 36331995-36340573 Setaria italica
Seita.5G311900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36331995-36336994 Setaria italica
Seita.5G311900 5.0kb downstream 5.0kb downstream 8579 true scaffold_5: 36336995-36345573 Setaria italica
Seita.5G311900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36340574-36345573 Setaria italica
Seita.5G311900 10.0kb upstream 10.0kb upstream 13579 true scaffold_5: 36326995-36340573 Setaria italica
Seita.5G311900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36326995-36336994 Setaria italica
Seita.5G311900 10.0kb downstream 10.0kb downstream 13579 true scaffold_5: 36336995-36350573 Setaria italica
Seita.5G311900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36340574-36350573 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197653 5267 Panicoideae View MSA
124576607 5269 Grass View MSA
122041719 5273 Angiosperm View MSA
121345003 5274 Embryophyte View MSA
123427014 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 143.56     High High
cufflinks 69.885     High Low
cufflinks 97.095     High  
cufflinks 91.956     High  
cufflinks 78.499     High  
cufflinks 69.199     High Low
cufflinks 83.678     High  
cufflinks 75.559     High Low
cufflinks 76.246     High Low
cufflinks 83.931     High  
cufflinks 140.393     High High
cufflinks 119.791     High  
cufflinks 135.198     High High
cufflinks 109.648     High  
cufflinks 89.567     High  
cufflinks 98.804     High  
cufflinks 105.385     High  
cufflinks 128.786     High High
cufflinks 112.592     High  
cufflinks 83.975     High  

0 Strain