Gene : Seita.5G313900 S. italica v2.2
Defline:  (1 of 53) 3.1.1.11 - Pectinesterase / Pectin methylesterase Genomic Order:  3139
Name:  ? Seita.5G313900 Secondary Identifier:  ? PAC:32684876
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-1081 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G313900 0.5kb upstream 0.5kb upstream 3648 true scaffold_5: 36517184-36520831 Setaria italica
Seita.5G313900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36520332-36520831 Setaria italica
Seita.5G313900 0.5kb downstream 0.5kb downstream 3648 true scaffold_5: 36516684-36520331 Setaria italica
Seita.5G313900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36516684-36517183 Setaria italica
Seita.5G313900 1.0kb upstream 1.0kb upstream 4148 true scaffold_5: 36517184-36521331 Setaria italica
Seita.5G313900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36520332-36521331 Setaria italica
Seita.5G313900 1.0kb downstream 1.0kb downstream 4148 true scaffold_5: 36516184-36520331 Setaria italica
Seita.5G313900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36516184-36517183 Setaria italica
Seita.5G313900 2.0kb upstream 2.0kb upstream 5148 true scaffold_5: 36517184-36522331 Setaria italica
Seita.5G313900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36520332-36522331 Setaria italica
Seita.5G313900 2.0kb downstream 2.0kb downstream 5148 true scaffold_5: 36515184-36520331 Setaria italica
Seita.5G313900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36515184-36517183 Setaria italica
Seita.5G313900 5.0kb upstream 5.0kb upstream 8148 true scaffold_5: 36517184-36525331 Setaria italica
Seita.5G313900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36520332-36525331 Setaria italica
Seita.5G313900 5.0kb downstream 5.0kb downstream 8148 true scaffold_5: 36512184-36520331 Setaria italica
Seita.5G313900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36512184-36517183 Setaria italica
Seita.5G313900 10.0kb upstream 10.0kb upstream 13148 true scaffold_5: 36517184-36530331 Setaria italica
Seita.5G313900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36520332-36530331 Setaria italica
Seita.5G313900 10.0kb downstream 10.0kb downstream 13148 true scaffold_5: 36507184-36520331 Setaria italica
Seita.5G313900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36507184-36517183 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199126 5267 Panicoideae View MSA
124579369 5269 Grass View MSA
122041979 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.035     Low  
cufflinks 0.081     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.067     Low  
cufflinks 0.025     Low  
cufflinks 0.057     Low  
cufflinks 0.067     Low  
cufflinks 0.148     Low  
cufflinks 0.06     Low  
cufflinks 0.061     Low  
cufflinks 0.096     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.168       High
cufflinks 0.003     Low Low
cufflinks 0.085     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.112     Low  

0 Strain