Gene : Seita.5G314200 S. italica v2.2
Defline:  (1 of 2) 6.1.1.2 - Tryptophan--tRNA ligase / Tryptophanyl-tRNA synthetase Genomic Order:  3142
Name:  ? Seita.5G314200 Secondary Identifier:  ? PAC:32682787
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G314200 0.5kb upstream 0.5kb upstream 8183 true scaffold_5: 36537444-36545626 Setaria italica
Seita.5G314200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36545127-36545626 Setaria italica
Seita.5G314200 0.5kb downstream 0.5kb downstream 8183 true scaffold_5: 36536944-36545126 Setaria italica
Seita.5G314200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36536944-36537443 Setaria italica
Seita.5G314200 1.0kb upstream 1.0kb upstream 8683 true scaffold_5: 36537444-36546126 Setaria italica
Seita.5G314200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36545127-36546126 Setaria italica
Seita.5G314200 1.0kb downstream 1.0kb downstream 8683 true scaffold_5: 36536444-36545126 Setaria italica
Seita.5G314200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36536444-36537443 Setaria italica
Seita.5G314200 2.0kb upstream 2.0kb upstream 9683 true scaffold_5: 36537444-36547126 Setaria italica
Seita.5G314200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36545127-36547126 Setaria italica
Seita.5G314200 2.0kb downstream 2.0kb downstream 9683 true scaffold_5: 36535444-36545126 Setaria italica
Seita.5G314200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36535444-36537443 Setaria italica
Seita.5G314200 5.0kb upstream 5.0kb upstream 12683 true scaffold_5: 36537444-36550126 Setaria italica
Seita.5G314200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36545127-36550126 Setaria italica
Seita.5G314200 5.0kb downstream 5.0kb downstream 12683 true scaffold_5: 36532444-36545126 Setaria italica
Seita.5G314200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36532444-36537443 Setaria italica
Seita.5G314200 10.0kb upstream 10.0kb upstream 17683 true scaffold_5: 36537444-36555126 Setaria italica
Seita.5G314200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36545127-36555126 Setaria italica
Seita.5G314200 10.0kb downstream 10.0kb downstream 17683 true scaffold_5: 36527444-36545126 Setaria italica
Seita.5G314200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36527444-36537443 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194918 5267 Panicoideae View MSA
124576484 5269 Grass View MSA
122047133 5273 Angiosperm View MSA
121345289 5274 Embryophyte View MSA
123423978 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.421        
cufflinks 1.744        
cufflinks 1.51        
cufflinks 1.304        
cufflinks 2.636        
cufflinks 1.507        
cufflinks 2.649        
cufflinks 5.34       High
cufflinks 6.024       High
cufflinks 1.452        
cufflinks 1.255        
cufflinks 1.006        
cufflinks 0.763       Low
cufflinks 1.657        
cufflinks 0.824       Low
cufflinks 2.724        
cufflinks 1.066        
cufflinks 0.965        
cufflinks 1.349        
cufflinks 0.971        

0 Strain